Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   CK207_RS16530 Genome accession   NZ_CP023055
Coordinates   331481..333532 (+) Length   683 a.a.
NCBI ID   WP_013868489.1    Uniprot ID   A0AAW8GRZ9
Organism   Vibrio anguillarum strain VIB43     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 326481..338532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK207_RS16520 (CK207_16520) - 327159..328301 (+) 1143 WP_029388470.1 exonuclease SbcCD subunit D -
  CK207_RS16525 (CK207_16525) - 328301..331342 (+) 3042 WP_069212071.1 SMC family ATPase -
  CK207_RS16530 (CK207_16530) cqsS 331481..333532 (+) 2052 WP_013868489.1 hybrid sensor histidine kinase/response regulator Regulator
  CK207_RS16535 (CK207_16535) cqsA 333619..334800 (-) 1182 WP_017050024.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CK207_RS16540 (CK207_16540) - 335000..335974 (-) 975 WP_019282130.1 TDT family transporter -
  CK207_RS16545 (CK207_16545) clcA 336123..337520 (-) 1398 WP_013868492.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78399.73 Da        Isoelectric Point: 5.4015

>NTDB_id=244624 CK207_RS16530 WP_013868489.1 331481..333532(+) (cqsS) [Vibrio anguillarum strain VIB43]
MDVVKKIYQYAEPNLTLVGWMGFIGFPLYYYVWTYLFPQPYESMELRAICAILFAGIIFRNSTPKHLQHYLPYYYLFSIG
FCLPFFFGYMMLMNDWSTIWAMSFMASIFLHILLVHETKVMLIQAAIALACAYFVTYGVMDAELRVMVEWPYVPIFLFTY
IFGNLFYFRNQIEHEAKVSIAKSFGAGIAHEMRNPLSALKASIEVMGSVLPNPTASKSESYTLPSKDLELIAGLLRDADE
VIRSGNETIDLLLTSIDQNRVSTSTFKKHAVKPVIEEALRSFSYKRPEDRQAVTLKVVDDFDFLGSSTLLKYVLYNLLKN
AFYYQNNDMFNIHITLKSSENCHQITVKDNGVGIEPHLLDDIFKDFYTFGKNGSYGLGLPFCRKVMHAFGGDIICRSELG
EWTEFTLTFPEYDSQAVANIKLDLMKAKSLLYIGKTSIVNRYLSEKSFYLGFQLNVLEPESALRREEFEFEFDLIFVDLQ
TLDETPDYLTKLEPKLHFTQAKVCYLYDQNQRYALTMERHLTIYPIEKHKLLLDGSAIIDELLFETEELIADKNVIPLKQ
YDYEKRILLVDDNHSLRSFTALLLEKQGYEVLQASDGELALQMLANNSIDLVLMDIEMPIMDGISATLSIRSSTASYSKV
PIIGHTGDNSPSTIEKIRTSGMNDYVLKPADKTLLLKKLSHWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=244624 CK207_RS16530 WP_013868489.1 331481..333532(+) (cqsS) [Vibrio anguillarum strain VIB43]
ATGGACGTAGTAAAAAAAATATACCAGTACGCTGAGCCGAACCTCACCCTTGTGGGATGGATGGGGTTCATTGGTTTTCC
CCTCTATTATTACGTGTGGACTTATCTCTTTCCACAACCTTATGAAAGTATGGAGTTACGGGCGATTTGCGCCATTTTAT
TTGCGGGGATTATTTTTCGCAATTCAACGCCGAAACATTTACAGCACTACTTACCTTATTATTACTTGTTTTCAATAGGA
TTTTGTTTGCCATTCTTTTTTGGCTACATGATGCTGATGAACGATTGGTCAACGATCTGGGCGATGTCGTTCATGGCGTC
TATTTTCCTCCATATCCTCTTAGTCCACGAAACAAAAGTTATGCTAATTCAAGCCGCCATTGCATTAGCATGTGCTTACT
TTGTGACTTATGGCGTAATGGACGCGGAACTGCGAGTGATGGTGGAATGGCCGTACGTACCGATTTTTCTATTTACTTAC
ATTTTTGGCAACCTGTTCTATTTTCGTAACCAAATTGAACATGAAGCGAAGGTATCAATTGCCAAGTCTTTTGGCGCAGG
GATTGCGCATGAAATGAGAAATCCATTAAGTGCGTTAAAAGCGTCAATTGAAGTAATGGGTTCAGTATTGCCCAATCCTA
CGGCATCCAAATCAGAATCTTATACGCTACCGTCTAAAGATTTAGAGCTGATTGCTGGGCTATTAAGAGATGCTGATGAA
GTCATTCGCTCCGGTAATGAGACCATTGATTTGCTGTTAACTTCGATTGATCAAAATAGGGTCTCAACATCGACCTTTAA
AAAGCATGCTGTAAAGCCTGTTATAGAAGAGGCACTGCGCAGTTTTTCTTATAAAAGACCAGAAGACAGGCAGGCAGTGA
CTCTTAAGGTGGTGGATGACTTTGATTTTTTAGGCAGCAGTACACTGTTAAAATACGTGCTCTATAATCTACTCAAGAAT
GCGTTCTACTATCAAAATAACGATATGTTTAATATCCATATCACCTTGAAATCAAGTGAGAATTGCCACCAAATTACAGT
GAAAGACAATGGTGTTGGTATTGAACCTCATTTGTTGGACGATATTTTTAAAGACTTTTATACTTTCGGTAAAAATGGCA
GCTATGGTCTGGGGTTACCCTTTTGCCGTAAAGTAATGCATGCTTTTGGAGGGGATATTATCTGCCGTTCTGAACTTGGA
GAGTGGACGGAGTTTACCTTAACGTTTCCCGAGTATGATTCGCAAGCCGTTGCTAATATTAAACTCGATCTAATGAAGGC
GAAATCTCTGCTTTATATTGGCAAAACGAGCATAGTGAATCGTTATCTCAGTGAGAAATCGTTCTATCTTGGTTTCCAGC
TTAATGTCTTAGAGCCAGAGAGTGCTTTGCGTCGAGAAGAGTTTGAATTTGAGTTTGATCTGATCTTTGTGGATCTGCAA
ACGTTGGATGAAACGCCGGATTACTTAACCAAACTGGAACCTAAACTGCATTTTACACAAGCAAAAGTTTGCTATTTATA
TGACCAAAATCAGCGTTACGCGCTGACGATGGAGCGTCATTTAACCATTTACCCAATTGAAAAGCACAAATTGTTATTGG
ATGGATCGGCGATTATTGATGAACTACTCTTTGAAACGGAAGAGCTTATTGCCGATAAAAATGTTATCCCGTTAAAACAA
TATGATTATGAAAAACGAATTTTGTTGGTCGATGATAACCACTCCTTACGTAGCTTCACCGCTCTGTTGCTAGAAAAGCA
AGGGTATGAAGTACTGCAAGCGAGCGATGGGGAATTAGCATTACAAATGTTGGCCAATAACTCAATTGACTTGGTGTTAA
TGGATATTGAAATGCCGATTATGGATGGTATTTCGGCCACTTTATCTATCCGTTCATCCACCGCTTCTTACAGTAAAGTG
CCTATTATTGGGCACACGGGTGACAATAGCCCTTCAACGATAGAAAAAATCCGTACATCAGGAATGAATGATTACGTTTT
AAAACCAGCGGATAAAACGCTATTGTTAAAAAAATTAAGTCACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

56.223

100

0.562

Multiple sequence alignment