Detailed information NTG0244611

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: CK207_RS09020
• Genome accession: NZ_CP023054
• Coordinates: 1950976..1952400 (+)
• Length: 474 a.a.
• NCBI ID: WP_069211963.1
• Uniprot ID: A0A289GCC7
• Organism: Vibrio anguillarum strain VIB43
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1945976..1957400

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CK207_RS09005 (CK207_09005)	-	1946378..1948336 (-)	1959	WP_069211964.1	methyl-accepting chemotaxis protein	-
CK207_RS09010 (CK207_09010)	-	1948553..1949236 (+)	684	WP_019282578.1	NAD(P)H-binding protein	-
CK207_RS09015 (CK207_09015)	-	1949457..1950824 (+)	1368	WP_029388301.1	L-cystine transporter	-
CK207_RS09020 (CK207_09020)	sbcB	1950976..1952400 (+)	1425	WP_069211963.1	exodeoxyribonuclease I	Machinery gene
CK207_RS09025 (CK207_09025)	-	1952525..1952857 (+)	333	WP_033197434.1	CidA/LrgA family protein	-
CK207_RS09030 (CK207_09030)	-	1952857..1953537 (+)	681	WP_010319624.1	CidB/LrgB family autolysis modulator	-
CK207_RS09035 (CK207_09035)	cdd	1953746..1954633 (+)	888	WP_019282580.1	cytidine deaminase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54677.13 Da
• Isoelectric Point: 5.4372

>NTDB_id=244611 CK207_RS09020 WP_069211963.1 1950976..1952400(+) (sbcB) [Vibrio anguillarum strain VIB43]
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPTDYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCPILAPAKTLTAENAD
HIGVDRNLCLEHLALIKQYPEIRERLIGLYTIEREYKHSDDVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARHYPLTLSDEEQRRWATHCRDYFESHLEEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS

Nucleotide

• Length: 1425 bp

>NTDB_id=244611 CK207_RS09020 WP_069211963.1 1950976..1952400(+) (sbcB) [Vibrio anguillarum strain VIB43]
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCGGGCGTTCGCACCGATATGGATTTTAATATTATTGGCGAACCACTGGTTATCTATTGCCAACCACCAACGG
ACTATTTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACACCACAAAAAGCGGTGGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGTCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTACACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCGCTACGTCCAGAAGGCATCAACTGGCCCGAAAATGACGAAGGCTTTACC
AGTTTTAAGTTGGAGCATCTCTCGGTTGCCAATGGCATCGAACACGCAAATGCCCACGATGCTATGGCCGATGTTATCGC
CACCATTGAGCTGGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGGGTATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATGCGGTTATTGTGGTGGACCTTGCCAAAAACCCTCA
ACCCCTGATCGATTTAAGCAGCGAAGAACTGCATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCCCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCAGAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCATCAAGCAGTACCCTGAGATCAGAGAAAGGCTGAT
TGGCCTCTACACAATTGAGCGAGAATATAAGCACAGTGACGATGTCGATACTCAACTCTACGACGGTTTCTTCTCTCCCG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGACCCTGTCAACCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGCCATTACCCATTGACATTAAGTGACGAAGAGCAAAGGCGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGAAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTCGAAGACATCGCGAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

3D structure

• AlphaFold DB: A0A289GCC7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	81.184	99.789	0.81