Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   CK207_RS03190 Genome accession   NZ_CP023054
Coordinates   642898..646290 (-) Length   1130 a.a.
NCBI ID   WP_029388441.1    Uniprot ID   A0A289GER5
Organism   Vibrio anguillarum strain VIB43     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 637898..651290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK207_RS03175 (CK207_03175) - 638302..639327 (-) 1026 WP_013857641.1 ABC transporter permease -
  CK207_RS03180 (CK207_03180) - 639330..640316 (-) 987 WP_013857640.1 ABC transporter permease -
  CK207_RS03185 (CK207_03185) - 640483..642153 (-) 1671 WP_069212218.1 ABC transporter substrate-binding protein -
  CK207_RS03190 (CK207_03190) chiS 642898..646290 (-) 3393 WP_029388441.1 response regulator Regulator
  CK207_RS03195 (CK207_03195) rsmC 646490..647533 (-) 1044 WP_019283245.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  CK207_RS03200 (CK207_03200) - 647617..648702 (-) 1086 WP_017045856.1 AI-2E family transporter -
  CK207_RS03205 (CK207_03205) hemL 648980..650275 (-) 1296 WP_029388440.1 glutamate-1-semialdehyde 2,1-aminomutase -
  CK207_RS03210 (CK207_03210) erpA 650598..650939 (+) 342 WP_026027518.1 iron-sulfur cluster insertion protein ErpA -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 127839.55 Da        Isoelectric Point: 6.2690

>NTDB_id=244602 CK207_RS03190 WP_029388441.1 642898..646290(-) (chiS) [Vibrio anguillarum strain VIB43]
MFRFSRKQKFKRLQNTLMLAFLVLSITPLTVTAIFFLQSHTKDLQEQSTSHLLSVRDTKQQQVLDYLTAKESEVMGFVRS
ELAYASGGRFYGLVNAFQRLGLDIDQAREHAQQRYIPGSGDQIKTSILPQSSSYVGSERYRLLHKRYHWAYLELLKRSDF
DDILLVDLDGDVVYSVYKHDNYGTNLLTGKYKDSNLGKTFRQLEQQVGEQRKINEEYTPVIISDFSQQEGQSVAWLGAPI
IQQGYLHSYAMFRLPNNGITKLVADTNATSQIRTLLVGQDHHSRILSYTQQEIETSQKVINLALSGLSAVGTYTNTLNEK
TIAAYAPVANKNINWALVVEILEKEAYARVHQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
NVINTDRKDEIGRLAVSFERMQRSIREKMQLIKAQNKELESNIQLIRKQNDELHLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGSSGTITADHRYQLGIIISSGQRLTNLVDDLLDYHKMRYGSLDIKQCAVDLSGATRLVLELSNHLLNKKPIRV
INQIPDECIWVSADPQRLEQVLYNLVGNAIKYTTEGKIVISANVVDDKIRVQVVDTGQGIPAEQLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMQGTLYVSSQPMVGTTFSFTLPLASKAEIESTSYMEAGHFQSPTISDIELPEMHSLPENKE
GPVLLIADDEPVNLRVLDSFLRLEGYQVRTAKDGNEVISAVEKEKPELLLLDIMMPGLSGYQVCEKLRETYDHAELPIIM
LTALNQTDDRVRGFAAGANDYLSKPFNKQELAARITAHLTASKAEQRRIENNQLQQELKHRAMVEASLLETQGRLLEQLE
SAPEAIICIRDDHKIRFANEAAARLFKRSQEQLKRSNAEELIAPKYLVVEQEHYCGNIDIYVEDTRQHMSADVLRLPDGS
GLQAMYIFNVGGNINAARINNLETAIEALSSYAFEGDKEKLQQLKELGGEFTRIADKVSGESQSKQDLMREVLVEAMTSA
LDYWERVSNQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILDHCQEHGPERSHIEAQRD
KLQKLLTSSL

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=244602 CK207_RS03190 WP_029388441.1 642898..646290(-) (chiS) [Vibrio anguillarum strain VIB43]
ATGTTTAGGTTCTCTCGTAAGCAAAAATTTAAGCGCCTGCAAAATACTCTTATGCTGGCTTTTCTCGTTTTGAGCATCAC
GCCTTTAACTGTGACTGCCATTTTTTTTCTGCAATCACACACTAAAGATCTTCAAGAACAAAGCACGTCTCACTTATTGT
CAGTCAGAGACACTAAGCAACAGCAAGTTCTCGATTACCTCACGGCCAAAGAATCAGAAGTGATGGGGTTTGTCCGTTCA
GAGTTAGCTTATGCTAGTGGAGGGCGCTTTTACGGCTTAGTCAATGCGTTCCAAAGACTTGGTCTGGATATTGATCAAGC
TCGTGAGCATGCCCAGCAGCGTTATATTCCTGGCTCTGGTGATCAGATAAAAACGTCAATATTGCCACAATCGAGCAGCT
ATGTAGGCAGTGAACGGTATCGCCTACTGCACAAACGCTATCATTGGGCGTATTTAGAACTGCTTAAACGTTCTGATTTT
GACGATATTTTACTGGTGGATCTCGATGGTGATGTCGTTTATTCCGTTTATAAGCACGACAACTATGGGACGAATTTACT
GACCGGAAAATACAAAGATAGCAATCTGGGTAAAACATTCCGCCAGTTAGAGCAGCAAGTTGGCGAACAACGAAAAATCA
ATGAGGAATATACACCAGTCATTATTTCTGATTTTTCACAACAAGAAGGGCAATCAGTTGCTTGGCTTGGCGCGCCCATT
ATTCAACAGGGCTACCTGCACAGCTACGCCATGTTCCGCCTACCAAATAATGGCATCACAAAGCTCGTTGCTGACACCAA
TGCGACATCGCAAATAAGAACTTTACTCGTCGGGCAAGATCATCATTCTCGAATACTCTCTTACACGCAGCAAGAAATCG
AGACTAGTCAAAAAGTGATCAATCTTGCGCTTTCTGGATTGAGTGCCGTTGGTACTTACACTAATACATTGAATGAGAAA
ACCATTGCCGCCTATGCACCTGTTGCAAACAAAAACATCAATTGGGCCTTGGTCGTAGAGATACTAGAAAAAGAGGCTTA
TGCGCGAGTTCATCAGCTTGAGAAGTTGTTTATTTTCGCCATGCTAACCGCGATTATTTTAGTCGTCATCGCTTCACATT
ATCTCTCTAATTTTATTACCTCTCCCCTACTGAAGCTCACTTGGGCGGCAGAAAAAGTCTCAGCTGGGGATTTAGATGAA
AACGTTATCAATACCGATCGTAAAGATGAGATTGGTCGGCTCGCAGTGAGTTTTGAACGTATGCAGCGTTCGATTCGAGA
AAAAATGCAGCTGATTAAAGCGCAAAATAAAGAGCTCGAAAGCAACATTCAATTAATCCGCAAACAGAACGATGAGTTGC
ATCTCGCTAACAAACTAAAAGATGAATTCCTAGCCACAACCTCACATGAATTAAGAACACCGTTGCACGGTATGGTCGGT
ATTGCAGAAGCGCTGATCTCTGGGTCAAGTGGCACGATCACCGCCGATCACCGTTATCAATTGGGCATAATCATCAGCAG
TGGACAACGGCTGACAAACTTGGTCGATGACTTACTCGATTATCATAAGATGCGCTATGGCAGCTTGGATATCAAACAGT
GTGCTGTTGATCTATCCGGTGCAACACGCTTAGTGTTAGAGCTGTCTAACCATCTACTCAACAAAAAGCCCATTCGCGTA
ATAAACCAAATCCCTGATGAATGCATTTGGGTCTCTGCCGATCCACAACGATTAGAGCAAGTGCTTTATAACCTTGTAGG
AAACGCCATTAAATATACGACTGAAGGGAAAATTGTCATTTCAGCCAATGTGGTTGATGACAAGATTCGTGTCCAAGTTG
TCGATACGGGGCAAGGCATTCCTGCTGAACAACTTGAACACATCTTCGAACCACTGATTCAAGCAGGGCAAGATGCCAGT
CGTTATCGACAAGGCGCAGGCTTAGGTCTTTCGATCAGCCGTCAATTGATCGAATTAATGCAAGGAACGCTTTATGTCAG
TAGCCAACCTATGGTCGGTACGACATTCAGTTTTACCTTACCATTAGCATCAAAAGCGGAAATTGAATCGACAAGCTATA
TGGAAGCTGGCCATTTCCAATCTCCGACCATTTCAGACATTGAACTGCCTGAAATGCATTCACTACCTGAAAATAAAGAA
GGCCCAGTGCTACTGATAGCAGATGATGAACCCGTCAATCTGCGTGTCCTAGACAGCTTCCTACGTTTAGAAGGCTATCA
AGTCCGCACCGCTAAAGATGGCAATGAAGTCATTAGCGCGGTCGAAAAAGAAAAACCGGAACTTCTACTGCTCGACATTA
TGATGCCAGGATTAAGCGGCTACCAAGTCTGTGAAAAGTTAAGAGAAACATACGATCATGCCGAGCTACCTATCATTATG
TTGACGGCATTAAATCAAACTGACGATAGAGTTCGTGGTTTTGCAGCGGGAGCGAACGATTACTTATCGAAGCCGTTTAA
TAAGCAAGAGCTCGCTGCACGTATTACGGCGCATTTAACGGCCAGTAAAGCTGAACAAAGACGTATTGAGAACAACCAAC
TGCAACAAGAGCTGAAGCATAGAGCAATGGTAGAGGCCAGTTTATTGGAAACCCAAGGCCGTCTACTAGAGCAGCTCGAA
TCCGCTCCTGAGGCCATTATTTGCATTCGAGACGATCATAAAATCCGCTTTGCGAACGAAGCGGCTGCTCGGTTATTTAA
GCGCAGCCAAGAACAACTAAAGCGCTCAAATGCGGAAGAACTCATCGCCCCCAAATACTTAGTCGTCGAGCAAGAGCATT
ACTGCGGTAATATCGATATCTATGTCGAAGATACACGTCAGCATATGTCTGCTGATGTGTTACGACTACCGGATGGCTCT
GGGTTGCAGGCTATGTACATCTTTAACGTGGGTGGAAACATCAATGCAGCGCGCATCAATAACCTTGAAACCGCTATTGA
AGCGCTATCCAGTTACGCATTTGAAGGCGATAAAGAAAAACTGCAACAGCTCAAAGAACTCGGTGGCGAGTTCACACGTA
TCGCCGACAAAGTATCGGGAGAGAGTCAATCTAAGCAAGATTTAATGCGCGAAGTACTGGTTGAAGCAATGACCAGTGCT
TTAGATTACTGGGAACGGGTCAGTAACCAAAGCAAGTTTACCTTTGCAGAGCAGAGTGGGCTATGGCGAGTATATCTCGA
TAGAAGCACATTACAGACTCGGACACTAGACAAGTACTTACGTATCGAGACACTGCCTAAAACACCTCGCTGGCGTACCG
TTCTTAATTCGTTAGATTACATTCTTGATCATTGTCAGGAGCACGGCCCTGAACGCTCTCACATCGAAGCGCAGCGCGAT
AAATTGCAAAAGCTACTGACCTCATCACTCTAA

Domains

Predicted by InterproScan.

HAMP domain (HAMP)

(375-427)

Response regulator receiver domain (Response_reg)

(725-835)

His Kinase A (phospho-acceptor) domain (HisKA)

(460-525)

PAS fold (PAS)

(876-926)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(574-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A289GER5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

81.56

99.823

0.814

Multiple sequence alignment