Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CK207_RS01135 Genome accession   NZ_CP023054
Coordinates   214793..215494 (-) Length   233 a.a.
NCBI ID   WP_019282843.1    Uniprot ID   A0A233HRJ8
Organism   Vibrio anguillarum strain VIB43     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 209793..220494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK207_RS01105 (CK207_01105) gspL 209997..211208 (+) 1212 WP_017049386.1 type II secretion system protein GspL -
  CK207_RS01110 (CK207_01110) - 211219..211716 (+) 498 WP_013855429.1 type II secretion system protein M -
  CK207_RS01115 (CK207_01115) - 211713..212471 (+) 759 WP_019282844.1 type II secretion system protein N -
  CK207_RS01120 (CK207_01120) cysQ 212553..213380 (-) 828 WP_010319313.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CK207_RS01125 (CK207_01125) nudE 213405..213950 (-) 546 WP_013855426.1 ADP compounds hydrolase NudE -
  CK207_RS01130 (CK207_01130) nfuA 214106..214693 (-) 588 WP_013855425.1 Fe-S biogenesis protein NfuA -
  CK207_RS01135 (CK207_01135) comF 214793..215494 (-) 702 WP_019282843.1 amidophosphoribosyltransferase Machinery gene
  CK207_RS01140 (CK207_01140) bioH 215641..216405 (+) 765 WP_038148688.1 pimeloyl-ACP methyl ester esterase BioH -
  CK207_RS01145 (CK207_01145) - 216671..217141 (+) 471 WP_026027513.1 hypothetical protein -
  CK207_RS01150 (CK207_01150) - 217291..219621 (-) 2331 WP_095661219.1 Tex family protein -
  CK207_RS01155 (CK207_01155) greB 219965..220447 (+) 483 WP_019282841.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26630.04 Da        Isoelectric Point: 9.4459

>NTDB_id=244587 CK207_RS01135 WP_019282843.1 214793..215494(-) (comF) [Vibrio anguillarum strain VIB43]
MLSHWVQKTITRLVSRQCLLCRLPIETHQTGAWCKTCLTYFAPQPRCQQCGLPTLITVPQCGQCLANPPPWQRLYCVGDY
IFPLSHTIHQLKYEGQFWQSRHLSALLTPRIDTPAPLITSVPLHWQRRLKRGFNQSALLASQLSQQLGASCDNQLIKRNR
ATPQQQGLSKLQRKQNLKHAFTLRHLPTHKHIALVDDVVTTGSTVQQICQLLLEVGVERIDIYCICRTPEPKD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=244587 CK207_RS01135 WP_019282843.1 214793..215494(-) (comF) [Vibrio anguillarum strain VIB43]
ATGTTATCGCATTGGGTTCAAAAAACCATCACTCGCTTGGTAAGCCGTCAGTGTCTACTGTGTCGTTTACCGATTGAAAC
TCACCAAACTGGGGCTTGGTGTAAGACCTGCCTAACCTATTTTGCACCGCAACCTCGCTGCCAACAGTGCGGCCTGCCAA
CGCTTATTACCGTGCCTCAATGTGGGCAATGTTTAGCGAATCCTCCGCCTTGGCAACGCCTATACTGTGTCGGCGACTAT
ATTTTTCCGCTCAGTCACACCATTCATCAACTCAAATATGAAGGTCAATTTTGGCAATCTCGCCATTTGAGTGCCTTACT
GACGCCACGTATCGACACTCCCGCCCCGCTCATCACTAGCGTTCCGTTACACTGGCAACGGCGCTTAAAACGCGGCTTCA
ATCAAAGTGCGCTACTTGCCTCTCAATTAAGTCAACAACTGGGGGCTAGCTGCGATAACCAGTTGATCAAACGCAATCGC
GCAACACCCCAGCAGCAAGGGCTTTCTAAATTACAGCGCAAACAAAATCTCAAACATGCATTCACACTACGACACCTTCC
CACGCACAAGCACATTGCACTTGTTGACGATGTCGTGACCACGGGCAGCACCGTGCAGCAAATCTGTCAATTACTGCTTG
AAGTCGGTGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCTGAACCTAAAGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(136-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HRJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

58.369

100

0.584
  comF Vibrio campbellii strain DS40M4

51.681

100

0.528

Multiple sequence alignment