Detailed information NTG0244535

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C9E40_RS05615
• Genome accession: NZ_CP028685
• Coordinates: 1129949..1130941 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 111
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1124949..1135941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C9E40_RS05585 (C9E40_05925)	ispD	1125010..1125720 (+)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C9E40_RS05590 (C9E40_05930)	ispF	1125720..1126199 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C9E40_RS05595 (C9E40_05935)	truD	1126196..1127245 (+)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
C9E40_RS05600 (C9E40_05940)	surE	1127226..1127987 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C9E40_RS05605 (C9E40_05945)	pcm	1127981..1128607 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C9E40_RS05610 (C9E40_05950)	nlpD	1128792..1129886 (+)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
C9E40_RS05615 (C9E40_05955)	rpoS	1129949..1130941 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C9E40_RS05620 (C9E40_05960)	-	1131061..1131468 (-)	408	WP_000175365.1	MarR family transcriptional regulator	-
C9E40_RS05625 (C9E40_05965)	-	1131615..1132208 (+)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C9E40_RS05630 (C9E40_05970)	-	1132208..1133635 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C9E40_RS05635 (C9E40_05975)	-	1133646..1133882 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C9E40_RS05640 (C9E40_05980)	pphB	1133923..1134579 (-)	657	WP_001141350.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=244535 C9E40_RS05615 WP_000081550.1 1129949..1130941(+) (rpoS) [Escherichia coli strain 111]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=244535 C9E40_RS05615 WP_000081550.1 1129949..1130941(+) (rpoS) [Escherichia coli strain 111]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACAGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715