Detailed information NTG0024443

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: PSYC_RS11920
• Genome accession: NC_007204
• Coordinates: 1120899..1121810 (+)
• Length: 303 a.a.
• NCBI ID: WP_264622175.1
• Uniprot ID: -
• Organism: Psychrobacter arcticus 273-4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1119138..1120019	1120899..1121810	flank	880

Gene organization within MGE regions

Location: 1119138..1121810

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSYC_RS04850 (Psyc_0933)	-	1119138..1120019 (+)	882	WP_011279666.1	IS982 family transposase	-
PSYC_RS11920	pilA	1120899..1121810 (+)	912	WP_264622175.1	signal recognition particle-docking protein FtsY	Machinery gene

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 32489.32 Da
• Isoelectric Point: 5.0777

>NTDB_id=24443 PSYC_RS11920 WP_264622175.1 1120899..1121810(+) (pilA) [Psychrobacter arcticus 273-4]
MKTGLSKSRKNLAEGMVGILIGGKEIDDELLEEVEDQLLVADIGVNATNRIIKSLTEQTDRGDLIYAHSLYKALQTELVD
ILTPKVAPLIIDTSKQPFVILVVGVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGERNNIPVVAQGH
GSDSASVIFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADSSAPHEGMIVLDAGTGQNAINQVELFNK
VVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDDLRAFSPKQFVAALFETDDKE

Nucleotide

• Length: 912 bp

>NTDB_id=24443 PSYC_RS11920 WP_264622175.1 1120899..1121810(+) (pilA) [Psychrobacter arcticus 273-4]
ATGAAAACCGGCTTGAGTAAATCGCGCAAAAATTTAGCTGAAGGGATGGTCGGTATCCTTATTGGTGGCAAAGAGATTGA
TGATGAGCTGTTAGAAGAAGTCGAAGACCAGCTACTAGTGGCTGATATCGGTGTCAACGCGACCAATCGTATTATTAAAA
GTCTTACTGAGCAGACAGATCGTGGCGATTTAATCTATGCACATTCATTGTACAAGGCACTGCAAACTGAATTGGTCGAT
ATCTTAACGCCAAAAGTTGCACCACTCATCATTGATACCAGTAAACAGCCTTTTGTTATCTTGGTTGTAGGCGTGAATGG
CGTGGGCAAAACCACTACTATCGGCAAGCTTGCCAAACGTCTGCAAGGCGAGGGCAAGTCGGTCATGCTGGCAGCTGGTG
ATACGTTCCGCGCCGCCGCCACTGAACAGCTACAAATTTGGGGCGAACGCAATAATATTCCAGTCGTGGCGCAAGGTCAT
GGCTCTGATAGTGCTTCTGTTATATTTGATGCCATGCAATCTGCTAAAGCAAAAAACATTGATGTATTAATTGCTGATAC
CGCTGGGCGCTTACAGAATAAAACTCACCTGATGGCAGAGCTCGAAAAAGTAGTGCGCGTGATGCGTAAAGCAGACTCAA
GTGCGCCTCATGAGGGTATGATTGTGCTTGATGCTGGCACGGGTCAAAATGCAATTAATCAAGTTGAGTTATTCAATAAA
GTGGTGCCATTAACCGGTATTACGATTACCAAATTAGACGGTACTGCTAAAGGCGGCGTGGTCTTTAATATTGCCGAAAC
AACGGATGTGCCTATTCGTTATATTGGTGTAGGCGAGTCGATTGATGATTTGCGTGCTTTTAGTCCCAAACAATTTGTCG
CCGCATTGTTTGAGACCGATGATAAAGAATAG

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (97-297)

• SRP54-type protein, helical bundle domain (SRP54_N) (21-78)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.013	98.35	0.512