Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Aba10324_RS09495 Genome accession   NZ_CP023022
Coordinates   1956170..1956811 (-) Length   213 a.a.
NCBI ID   WP_000201231.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 10324     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1951170..1961811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba10324_RS09475 (Aba10324_09475) aroK 1952086..1952655 (-) 570 WP_000643712.1 shikimate kinase AroK -
  Aba10324_RS09480 (Aba10324_09480) pilQ 1952667..1954832 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  Aba10324_RS09485 (Aba10324_09485) pilP 1954895..1955422 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  Aba10324_RS09490 (Aba10324_09490) pilO 1955433..1956173 (-) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  Aba10324_RS09495 (Aba10324_09495) pilN 1956170..1956811 (-) 642 WP_000201231.1 PilN domain-containing protein Machinery gene
  Aba10324_RS09500 (Aba10324_09500) pilM 1956811..1957869 (-) 1059 WP_005119265.1 pilus assembly protein PilM Machinery gene
  Aba10324_RS09505 (Aba10324_09505) ponA 1958030..1960585 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  Aba10324_RS09510 (Aba10324_09510) - 1960603..1961427 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  Aba10324_RS09515 (Aba10324_09515) - 1961430..1961762 (-) 333 WP_000169603.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24033.38 Da        Isoelectric Point: 5.4028

>NTDB_id=244173 Aba10324_RS09495 WP_000201231.1 1956170..1956811(-) (pilN) [Acinetobacter baumannii strain 10324]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQREA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=244173 Aba10324_RS09495 WP_000201231.1 1956170..1956811(-) (pilN) [Acinetobacter baumannii strain 10324]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGTACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGAAGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment