Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   Aba9201_RS15220 Genome accession   NZ_CP023020
Coordinates   3103199..3103726 (+) Length   175 a.a.
NCBI ID   WP_000695058.1    Uniprot ID   A0A3R9DHF3
Organism   Acinetobacter baumannii strain 9201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3098199..3108726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba9201_RS15205 (Aba9201_15190) pilM 3100752..3101810 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  Aba9201_RS15210 (Aba9201_15195) pilN 3101810..3102451 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  Aba9201_RS15215 (Aba9201_15200) pilO 3102448..3103188 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  Aba9201_RS15220 (Aba9201_15205) pilP 3103199..3103726 (+) 528 WP_000695058.1 pilus assembly protein PilP Machinery gene
  Aba9201_RS15225 (Aba9201_15210) pilQ 3103789..3105954 (+) 2166 WP_001017038.1 type IV pilus secretin PilQ family protein Machinery gene
  Aba9201_RS15230 (Aba9201_15215) aroK 3105966..3106535 (+) 570 WP_000643712.1 shikimate kinase AroK -
  Aba9201_RS15235 (Aba9201_15220) aroB 3106564..3107646 (+) 1083 WP_001194002.1 3-dehydroquinate synthase -
  Aba9201_RS15240 (Aba9201_15225) - 3107662..3108537 (+) 876 WP_000218798.1 hypothetical protein -

Sequence


Protein


Download         Length: 175 a.a.        Molecular weight: 19357.57 Da        Isoelectric Point: 9.0270

>NTDB_id=244138 Aba9201_RS15220 WP_000695058.1 3103199..3103726(+) (pilP) [Acinetobacter baumannii strain 9201]
MKIKQITLCVLASVVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQSPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=244138 Aba9201_RS15220 WP_000695058.1 3103199..3103726(+) (pilP) [Acinetobacter baumannii strain 9201]
ATGAAAATTAAGCAAATTACTCTTTGTGTTTTGGCGAGTGTTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTTGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGTCACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATCACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains


Predicted by InterproScan.

(27-170)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A3R9DHF3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

97.714

100

0.977

  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709


Multiple sequence alignment