Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A6J73_RS03590 Genome accession   NZ_CP023011
Coordinates   785360..786730 (+) Length   456 a.a.
NCBI ID   WP_094940731.1    Uniprot ID   -
Organism   Enterococcus hirae strain FDAARGOS_234     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 780360..791730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J73_RS03565 (A6J73_03570) - 781675..781992 (+) 318 WP_094940729.1 hypothetical protein -
  A6J73_RS03570 (A6J73_03575) - 782081..782425 (-) 345 WP_010720642.1 hypothetical protein -
  A6J73_RS03575 (A6J73_03580) - 782529..783773 (-) 1245 WP_094940730.1 glutamate-5-semialdehyde dehydrogenase -
  A6J73_RS03580 (A6J73_03585) proB 783770..784576 (-) 807 WP_010720640.1 glutamate 5-kinase -
  A6J73_RS03585 (A6J73_03590) - 784778..785308 (+) 531 WP_010720639.1 dUTP diphosphatase -
  A6J73_RS03590 (A6J73_03595) radA 785360..786730 (+) 1371 WP_094940731.1 DNA repair protein RadA Machinery gene
  A6J73_RS03595 (A6J73_03600) - 786764..787924 (+) 1161 WP_094940732.1 PIN/TRAM domain-containing protein -
  A6J73_RS03600 (A6J73_03605) gltX 788141..789601 (+) 1461 WP_010720636.1 glutamate--tRNA ligase -
  A6J73_RS03605 (A6J73_03610) epsC 789914..790450 (+) 537 WP_010720635.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49895.54 Da        Isoelectric Point: 7.3886

>NTDB_id=244058 A6J73_RS03590 WP_094940731.1 785360..786730(+) (radA) [Enterococcus hirae strain FDAARGOS_234]
MAKKAKVQFVCQNCGYVSPKFLGRCPNCGKWNTMVEEIEQDTTDRRTRTSLTGEKAKPTKIAEVIPKKEPRVKTKLDELN
RVLGGGVVPGSMILIGGDPGIGKSTLLLQVSQQLADIGGKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEIGR
AIEQISPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEERLEGATGSAIVVAMEGTRPILVEIQALVTPTMYG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTG
EIRRVSHIEQRVKEVQKLGFTKVYLPKNNLGGWNPPTGIEVVGVATLAETLKRVFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=244058 A6J73_RS03590 WP_094940731.1 785360..786730(+) (radA) [Enterococcus hirae strain FDAARGOS_234]
ATGGCAAAAAAAGCGAAAGTCCAGTTTGTTTGCCAAAATTGTGGCTATGTTTCGCCTAAATTCTTAGGGCGTTGCCCAAA
TTGCGGGAAATGGAACACGATGGTCGAGGAAATCGAGCAAGATACGACTGACCGTAGAACACGAACAAGTTTGACTGGAG
AAAAAGCCAAACCAACGAAAATTGCAGAAGTGATTCCTAAAAAGGAACCACGAGTCAAAACAAAATTAGATGAATTGAAT
CGAGTTTTGGGTGGGGGCGTAGTTCCGGGGTCAATGATTTTGATTGGTGGCGATCCAGGCATCGGTAAATCCACATTACT
TTTACAAGTATCCCAACAATTAGCTGATATCGGCGGGAAAGTATTATATGTTTCTGGAGAAGAAAGTGCAGAACAAATTA
AATTACGTGCCGAGCGTTTGGGCTCAATCAATACAGAATTTTACTTATATGCTGAAACTGATATGAATGAAATTGGCCGT
GCCATCGAACAGATTTCACCAGATTATGTGATCATTGATTCGATTCAAACGATGACACAACCTGATATTACGAGTGTAGC
AGGGAGTGTCAGTCAAGTGAGAGAAACGACTGCTGAGTTGTTGAAAATAGCGAAAACAAATGGGATTGCGATTTTTATCG
TAGGACATGTAACAAAAGAAGGCTCAATCGCGGGTCCACGTATGCTTGAACATATGGTTGATACTGTTTTGTATTTTGAA
GGAGAACAGCATCATAGTTTTCGTATTTTGAGAGCAGTAAAGAATCGATTTGGTTCAACAAATGAAATTGGTATATTTGA
AATGCATGAACATGGATTAGAAGAAGTTGCGAATCCTTCCCAAATCTTTTTGGAAGAACGATTAGAAGGAGCAACAGGCT
CAGCGATTGTTGTGGCGATGGAAGGTACCCGCCCAATTTTAGTGGAAATCCAAGCACTGGTAACACCAACAATGTATGGA
AATGCTAAACGAACCACTACTGGCTTAGATTTTAACCGAGTATCATTGATCATGGCAGTTCTCGAAAAACGAGCAGGCTT
ACTGTTGCAGAATCAAGATGCTTACTTAAAAGCAGCAGGTGGGGTAAAATTAAATGAACCAGCCATTGATTTAGCGATTG
CTGTGAGTATTGCTTCCAGTTACAAAGAAAAAGGGACACAACCGACAGAATGTTTTATTGGCGAAATAGGGTTGACGGGC
GAAATTCGCCGTGTCAGTCATATTGAACAGCGTGTCAAAGAAGTACAAAAGCTGGGTTTCACAAAAGTTTATTTGCCAAA
GAACAATCTAGGAGGGTGGAATCCTCCGACTGGCATTGAAGTCGTAGGTGTCGCTACCTTGGCGGAAACGTTAAAACGTG
TCTTTCGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(71-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

74.066

99.781

0.739
  radA Streptococcus mitis NCTC 12261

74.066

99.781

0.739
  radA Streptococcus pneumoniae Rx1

73.846

99.781

0.737
  radA Streptococcus pneumoniae D39

73.846

99.781

0.737
  radA Streptococcus pneumoniae R6

73.846

99.781

0.737
  radA Streptococcus pneumoniae TIGR4

73.846

99.781

0.737
  radA Bacillus subtilis subsp. subtilis str. 168

67.184

98.904

0.664

Multiple sequence alignment