Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CKK50_RS00480 Genome accession   NZ_CP023005
Coordinates   124608..126449 (+) Length   613 a.a.
NCBI ID   WP_117319786.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain 6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 119608..131449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKK50_RS00455 (CKK50_00460) thiF 119678..120391 (-) 714 WP_117319782.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  CKK50_RS00460 (CKK50_00465) thiS 120444..120638 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  CKK50_RS00465 (CKK50_00470) - 121073..122041 (+) 969 WP_117319783.1 aldo/keto reductase -
  CKK50_RS00470 (CKK50_00475) - 122225..122716 (+) 492 WP_117319784.1 MarR family winged helix-turn-helix transcriptional regulator -
  CKK50_RS00475 (CKK50_00480) rcrP 122845..124596 (+) 1752 WP_117319785.1 ABC transporter ATP-binding protein Regulator
  CKK50_RS00480 (CKK50_00485) rcrQ 124608..126449 (+) 1842 WP_117319786.1 ABC transporter ATP-binding protein Regulator
  CKK50_RS00485 (CKK50_00490) - 126620..127600 (+) 981 WP_021912920.1 aldo/keto reductase -
  CKK50_RS00490 (CKK50_00495) - 127685..128644 (-) 960 WP_117319787.1 FAD:protein FMN transferase -
  CKK50_RS00495 (CKK50_00500) - 129089..130774 (+) 1686 WP_240324336.1 FTR1 family iron permease -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67371.19 Da        Isoelectric Point: 6.9489

>NTDB_id=243990 CKK50_RS00480 WP_117319786.1 124608..126449(+) (rcrQ) [Bifidobacterium adolescentis strain 6]
MPRGMGRGRGAVEKPKDFGGVMKKLVKFCSRYIPVMILALVLGAAGTVCQIIGPDKLKDMTNEITKGLPAMVHGKPVMNS
IDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQQLREAISQKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSVGSLITSITLFFGALIMMFYNNVTMTLCAIGSALLGLIIMGVIMKVSQKYFTRQQVALGDVNGHVEEMYTGHTVVK
AYCGEERSIEQFEKYNKDLYVSGWKSQFLSGLMMPIMNFVGNFGYVVVCVVGAALAMDGKIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLDEPELADETGKRALLGVGADGKPQPVRGDVEFSHVRFGYDADKTIINDFSASVKAG
QKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGIDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKKDVTDEQI
VAACKAVGLHHYIMSLPNGYDTVLDDKASLSQGQRQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRT
SFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLAKGGFYADIYNSQFTLAE

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=243990 CKK50_RS00480 WP_117319786.1 124608..126449(+) (rcrQ) [Bifidobacterium adolescentis strain 6]
ATGCCAAGAGGAATGGGACGCGGCCGTGGGGCCGTGGAAAAGCCGAAGGACTTCGGCGGAGTGATGAAGAAGCTCGTGAA
ATTCTGCAGCCGGTACATTCCGGTGATGATTCTCGCGCTGGTTCTGGGCGCTGCCGGCACGGTGTGCCAGATCATCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCACGAAGGGTCTGCCGGCCATGGTGCACGGCAAGCCCGTCATGAATTCG
ATCGATATGGACGCGGTGTCGCGCATCGCATGGCTGCTCGTCGCGCTGTACGTCGGGTACGCGCTGCTGAGCTACCTGCA
AAGCTGGCTGATGGCCAACGTCACGCAACGCACGGCACAGCAGCTACGTGAGGCGATCAGCCAGAAAATCAATCGCCTGC
CGCTGAAATATTTCGACAAAGTCAGCTACGGCGACGTGCTGAGCCGCATCACCAACGACGTCGACGCGATCGGACAGACG
CTCGGCCAGTCGGTCGGCTCGCTGATCACTTCGATCACGCTGTTCTTCGGCGCGCTCATCATGATGTTCTACAACAACGT
GACCATGACGCTGTGCGCCATCGGCTCCGCGCTGCTCGGCCTGATCATCATGGGCGTGATCATGAAGGTGTCGCAGAAGT
ACTTCACCCGCCAGCAGGTGGCGCTCGGCGACGTCAACGGCCACGTCGAGGAAATGTACACCGGCCACACCGTGGTCAAG
GCATACTGCGGCGAGGAACGCTCCATCGAGCAGTTCGAGAAGTACAACAAAGACCTGTACGTGTCCGGCTGGAAAAGCCA
GTTCCTGTCCGGCCTGATGATGCCGATCATGAACTTCGTCGGCAACTTCGGATACGTGGTGGTGTGCGTGGTCGGCGCGG
CGCTCGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACGCAGCCGCTG
TCCCAGTTCGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCAGCCGCATCCGAACGCGTCTTCGGCTTCCTTGACGAACC
GGAACTGGCCGACGAAACCGGCAAGCGGGCGTTGCTCGGCGTCGGCGCGGACGGCAAGCCGCAGCCGGTGCGCGGCGACG
TGGAATTCAGCCACGTGCGCTTCGGCTACGACGCGGACAAGACCATCATCAACGACTTCTCCGCGTCCGTGAAGGCCGGC
CAGAAGGTGGCCATCGTCGGCCCGACCGGCGCCGGCAAGACCACGATGGTCAACCTGCTGATGCGCTTCTACGAGATTTC
CGGTGGCACGATTTCGATCGACGGCATCGACACCAAGTCCGTACCGCGTTGGAACGTGCACGACCAGTTCTCCATGGTGC
TGCAGGACACGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGAAGGACGTCACCGACGAGCAGATC
GTGGCCGCATGCAAGGCCGTCGGCCTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGACAA
GGCGTCGCTTTCCCAGGGCCAGCGTCAGCTGCTGACGATCGCGCGAGCGATGGTGGAGGACGCGCCGATCCTGATCCTCG
ACGAGGCCACCTCGTCCGTCGACACCCGTACGGAAGAGCTGATTCAGAAGGCGATGGACGCGCTGACCGTGGGCCGCACG
AGCTTCGTGATCGCGCACCGCCTGTCCACCATCCGCGACGCCGACATGATCCTGGTGATGAACGGCGGCGACATCGTGGA
ACGCGGCACGCACGAGGAACTGCTCGCCAAGGGCGGCTTCTACGCCGACATCTACAACAGCCAGTTCACGCTGGCCGAGT
GA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(391-538)

ABC transporter transmembrane region (ABC_membrane)

(36-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.822

96.411

0.529

Multiple sequence alignment