Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CKK50_RS00475 Genome accession   NZ_CP023005
Coordinates   122845..124596 (+) Length   583 a.a.
NCBI ID   WP_117319785.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain 6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 117845..129596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKK50_RS00450 (CKK50_00455) - 118607..119521 (-) 915 WP_080703707.1 thiazole synthase -
  CKK50_RS00455 (CKK50_00460) thiF 119678..120391 (-) 714 WP_117319782.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  CKK50_RS00460 (CKK50_00465) thiS 120444..120638 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  CKK50_RS00465 (CKK50_00470) - 121073..122041 (+) 969 WP_117319783.1 aldo/keto reductase -
  CKK50_RS00470 (CKK50_00475) - 122225..122716 (+) 492 WP_117319784.1 MarR family winged helix-turn-helix transcriptional regulator -
  CKK50_RS00475 (CKK50_00480) rcrP 122845..124596 (+) 1752 WP_117319785.1 ABC transporter ATP-binding protein Regulator
  CKK50_RS00480 (CKK50_00485) rcrQ 124608..126449 (+) 1842 WP_117319786.1 ABC transporter ATP-binding protein Regulator
  CKK50_RS00485 (CKK50_00490) - 126620..127600 (+) 981 WP_021912920.1 aldo/keto reductase -
  CKK50_RS00490 (CKK50_00495) - 127685..128644 (-) 960 WP_117319787.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64469.55 Da        Isoelectric Point: 5.3140

>NTDB_id=243989 CKK50_RS00475 WP_117319785.1 122845..124596(+) (rcrP) [Bifidobacterium adolescentis strain 6]
MLRIVRYLSKAEIGQMLVALVSIVGQIWLDLTLPDYMADITQLVETPGSEMRDIWVAGGKMLLVSLGSAACAIVTGFIAA
RVGASFSQRLRSLEFNKVESFGPAEMNRFSTASLITRSTNDITQIQMFITMGLMMIVKAPIMAVWAVCKIAGKGFDWTLA
TGVAVAILLVVIAVIMHFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTEANKELTETQLFTNRAMAI
MMPLMNTVMNGLMLAVYWIGAYLIDAADAVDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTE
PMVTDGTQDAGKPGEEGEIEFRNVSFAYPDSRQAMLEGVNFKAKKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYKLKALRDKIGYVPQQSFLFKGTIASNVAYGDTDRDDDTVRRACDVAQATEFIDKKQKKYDSGISQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEKEAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHEE
LLDTCEVYRQIAESQLSEDELKR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=243989 CKK50_RS00475 WP_117319785.1 122845..124596(+) (rcrP) [Bifidobacterium adolescentis strain 6]
ATGCTTCGCATCGTACGATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCGTCGCGCTGGTCAGCATCGTCGGTCAGAT
CTGGCTTGACCTGACCCTGCCGGACTACATGGCCGACATCACGCAGCTCGTCGAAACCCCCGGCAGCGAAATGCGCGACA
TCTGGGTGGCCGGCGGCAAGATGCTGCTCGTCTCGCTCGGCTCGGCGGCCTGCGCCATCGTCACCGGCTTCATCGCCGCG
CGCGTGGGTGCCTCGTTCAGCCAGCGCCTGCGTTCGCTCGAATTCAACAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCGTCGCTGATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCATCACCATGGGTCTGA
TGATGATCGTCAAGGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCAGGAAAGGGCTTCGATTGGACGCTCGCC
ACCGGCGTCGCCGTGGCCATCCTGCTGGTGGTCATCGCCGTGATCATGCACTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAACATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCGTACAACGCCGAGG
ACTACCAGGAAGCCAAGTTCACCGAAGCCAACAAGGAACTCACCGAGACCCAGCTGTTCACCAACCGTGCCATGGCCATC
ATGATGCCGTTGATGAACACCGTCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCGTACCTCATCGACGCTGC
CGACGCCGTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTCATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGAGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAG
CCGATGGTCACCGACGGCACGCAGGACGCGGGCAAGCCGGGCGAGGAAGGCGAAATCGAATTCCGCAATGTGAGCTTCGC
CTACCCCGACTCGCGTCAGGCCATGTTGGAAGGCGTCAATTTCAAAGCCAAGAAGGGTCAGACGGTGGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCCCTCATCAACCTCGTGCCGCGTTTCTACGACGCCACGCAAGGCGAGGTGCTCGTCGAC
GGCGTCAACGTGCGCGACTACAAGCTGAAGGCGTTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCGTTCCTGTTCAA
GGGAACGATCGCCAGCAACGTCGCGTACGGAGATACGGACCGCGACGACGACACCGTGCGCCGCGCATGCGACGTCGCGC
AGGCGACGGAATTCATCGACAAAAAGCAGAAGAAGTATGATTCCGGCATTTCGCAGGGCGGTTCCAACGTTTCGGGCGGG
CAGAAGCAGCGTCTGTCGATCGCACGCGCCGTCTACCGTCATCCGGAAATCCTGATCTTCGACGATTCCTTCTCCGCGCT
CGACTTCAAAACCGACCGTGCCGTACGTGACGCGCTCGAAAAGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATCATGAATGCCGACCGCATCATCGTGCTCGACGACGGCAAAGTGGTCGGCCAGGGTACGCACGAGGAA
CTGCTCGACACGTGCGAAGTGTATCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAACTGAAGCGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-503)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.419

100

0.516

Multiple sequence alignment