Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CKF48_RS18195 Genome accession   NZ_CP022983
Coordinates   3569151..3570839 (+) Length   562 a.a.
NCBI ID   WP_095372620.1    Uniprot ID   -
Organism   Cytobacillus kochii strain BDGP4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3564151..3575839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKF48_RS18170 (CKF48_18160) - 3564458..3564691 (+) 234 WP_095372615.1 exodeoxyribonuclease VII small subunit -
  CKF48_RS18175 (CKF48_18165) - 3564697..3565587 (+) 891 WP_095372616.1 polyprenyl synthetase family protein -
  CKF48_RS18180 (CKF48_18170) dxs 3565706..3567598 (+) 1893 WP_095372617.1 1-deoxy-D-xylulose-5-phosphate synthase -
  CKF48_RS18185 (CKF48_18175) - 3567603..3568439 (+) 837 WP_095372618.1 TlyA family RNA methyltransferase -
  CKF48_RS18190 (CKF48_18180) ahrC 3568684..3569133 (+) 450 WP_095372619.1 transcriptional regulator AhrC/ArgR -
  CKF48_RS18195 (CKF48_18185) recN 3569151..3570839 (+) 1689 WP_095372620.1 DNA repair protein RecN Machinery gene
  CKF48_RS18200 (CKF48_18190) spoIVB 3570953..3572242 (+) 1290 WP_095372621.1 SpoIVB peptidase -
  CKF48_RS18205 (CKF48_18195) spo0A 3572570..3573364 (+) 795 WP_095372622.1 sporulation transcription factor Spo0A -
  CKF48_RS18210 (CKF48_18200) - 3573524..3574516 (+) 993 WP_095372623.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 64003.31 Da        Isoelectric Point: 5.1129

>NTDB_id=243837 CKF48_RS18195 WP_095372620.1 3569151..3570839(+) (recN) [Cytobacillus kochii strain BDGP4]
MLNEISIRNFAIIESITIAFNKGLTVLSGETGAGKSIIIDAVHLLVGGRGSSEYVRHGEEKAEIEGLFILDDEQHPCYKR
AQEFGIDIDEGMLILRRDISKSGKSVCRINGKLVTISILREIGSTLIDIHGQHEHQELMNESLHLPLLDQFGGTKIAKSR
QEYEEVYREYEQTMKRIKTLTENEQQMAHRLDLIQFQYEEITNANLKLNEDDALLEERNRLLNFEKMYEGVKISYNALQG
EQKGLDWISLAMNHLQQSAEVDEELVELQEVVANSFYQLEDTVAILRSKLDFMEFDPVRLNEIEERLNEINMLKRKYGPS
IEEILEYVAKIEEEIETLTNKETHIEHLLKQAKELQADLLVEGKELSELRRNAAERLTKMIHRELKALYMEKTVFEVHFI
TDKESFHKKGIDTVEFYLSTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
QVAIDSQVLCISHLPQVAAMADTHLFISKTLKAGRTKTTVKPLDDEEKIKEIGRMISGVEMTELTREHAKELLSLAKNVK
IP

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=243837 CKF48_RS18195 WP_095372620.1 3569151..3570839(+) (recN) [Cytobacillus kochii strain BDGP4]
GTGTTAAATGAAATATCAATTAGAAACTTTGCTATTATCGAATCAATCACAATTGCCTTTAATAAAGGTCTAACTGTGCT
TTCAGGAGAAACAGGAGCAGGAAAATCAATTATTATTGACGCCGTTCACCTGCTTGTTGGTGGCAGGGGTTCTTCAGAGT
ATGTAAGACATGGTGAAGAGAAAGCTGAGATAGAGGGTTTATTCATATTAGATGATGAACAACATCCGTGTTACAAACGG
GCGCAAGAATTTGGTATAGATATCGATGAAGGAATGTTGATTCTGAGACGAGATATATCTAAATCAGGTAAAAGTGTCTG
TCGAATAAATGGAAAACTTGTAACCATTTCTATTCTTCGAGAAATTGGTAGTACTCTAATTGACATACATGGTCAACATG
AACACCAAGAATTAATGAATGAAAGTTTGCATTTGCCTTTATTAGATCAATTTGGTGGTACCAAAATCGCTAAAAGCAGA
CAAGAATACGAAGAGGTCTATAGAGAATACGAGCAAACAATGAAAAGAATCAAGACATTAACAGAAAATGAACAGCAAAT
GGCTCATCGCCTGGATCTTATTCAATTTCAATATGAAGAAATAACAAACGCCAATTTAAAATTGAATGAAGATGATGCAC
TTTTAGAAGAGCGAAACCGCTTACTTAATTTTGAGAAGATGTATGAAGGCGTAAAAATTAGCTATAATGCCTTGCAAGGA
GAACAAAAAGGGCTTGATTGGATTAGTTTAGCTATGAATCACCTTCAACAATCGGCAGAAGTTGATGAAGAGTTAGTTGA
GTTGCAAGAAGTTGTTGCCAACAGTTTTTATCAATTAGAGGACACGGTAGCTATTTTAAGGAGTAAATTAGATTTTATGG
AATTTGATCCTGTTCGATTGAATGAAATTGAAGAGCGATTAAATGAAATCAATATGCTCAAACGAAAATATGGACCATCA
ATAGAGGAAATATTGGAATATGTTGCAAAGATTGAGGAAGAAATTGAAACATTAACCAACAAAGAAACTCATATCGAACA
CTTGCTCAAGCAGGCTAAAGAATTACAAGCTGATTTACTTGTCGAAGGAAAGGAATTGAGTGAATTAAGAAGAAATGCTG
CGGAACGATTAACAAAAATGATTCATCGTGAATTAAAAGCACTTTATATGGAAAAGACTGTATTTGAGGTCCATTTTATT
ACGGATAAAGAAAGCTTTCATAAAAAAGGTATTGATACAGTCGAATTTTACTTATCCACTAACCCAGGAGAACCGTTAAA
ACCATTATCAAAAATTGCATCAGGTGGTGAACTATCCCGAATTATGCTTGCTTTAAAGAGTATCTTTTCTAAACATCAAG
GGGTAACATCTATTATTTTTGATGAAGTTGATACAGGGGTAAGCGGAAGAGTCGCACAAGCTATAGCCGAAAAAATTCAT
CAAGTAGCGATTGATTCGCAAGTTCTTTGCATTTCCCATTTGCCACAAGTAGCTGCAATGGCAGATACGCATTTATTTAT
TTCTAAAACACTCAAAGCTGGCCGTACAAAAACAACGGTAAAGCCGTTGGATGACGAGGAAAAGATTAAAGAAATTGGTC
GTATGATCTCTGGTGTGGAAATGACTGAACTGACAAGGGAGCATGCGAAGGAATTACTGAGCCTTGCCAAAAATGTAAAA
ATACCATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

58.711

100

0.6

Multiple sequence alignment