Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CKF48_RS08140 Genome accession   NZ_CP022983
Coordinates   1611645..1612601 (-) Length   318 a.a.
NCBI ID   WP_095370865.1    Uniprot ID   -
Organism   Cytobacillus kochii strain BDGP4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1606645..1617601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKF48_RS08115 (CKF48_08115) - 1606685..1607419 (-) 735 WP_095370860.1 glucose 1-dehydrogenase -
  CKF48_RS08120 (CKF48_08120) - 1607619..1608197 (+) 579 WP_095370861.1 TetR/AcrR family transcriptional regulator -
  CKF48_RS08125 (CKF48_08125) - 1608564..1609586 (-) 1023 WP_095370862.1 siderophore ABC transporter substrate-binding protein -
  CKF48_RS08130 (CKF48_08130) - 1609935..1610705 (-) 771 WP_095370863.1 ABC transporter ATP-binding protein -
  CKF48_RS08135 (CKF48_08135) - 1610702..1611658 (-) 957 WP_095370864.1 iron chelate uptake ABC transporter family permease subunit -
  CKF48_RS08140 (CKF48_08140) ceuB 1611645..1612601 (-) 957 WP_095370865.1 ABC transporter permease Machinery gene
  CKF48_RS08145 (CKF48_08145) - 1613182..1613964 (-) 783 WP_095370866.1 serine hydrolase -
  CKF48_RS08150 (CKF48_08150) - 1613961..1614977 (-) 1017 WP_095370867.1 ABC transporter ATP-binding protein -
  CKF48_RS08155 (CKF48_08155) - 1614967..1615896 (-) 930 WP_095370868.1 C40 family peptidase -
  CKF48_RS08160 (CKF48_08160) - 1615886..1616989 (-) 1104 WP_095370869.1 dipeptide epimerase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35149.46 Da        Isoelectric Point: 9.1602

>NTDB_id=243811 CKF48_RS08140 WP_095370865.1 1611645..1612601(-) (ceuB) [Cytobacillus kochii strain BDGP4]
MRIWMLICAAIVLSFISLFIGAIDIKPMDLLDWESDETQIFLISRVPRLIAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGIMISMLFFTNVTYTQQVLFSFAFALVGTMVFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFFAYEADIL
QNISSWLMGSFTLVISGRYELLYVSIPVFILAYLYANKFTVAGMGEEFAKNLGLSYKWVLNIGLILVAIIATTVVLTVGV
IPFLGLIVPNIVSLYMGDNLRKTIPHTALLGVVFLLICDIIGRIVIHPYEIPVNVTVAVIGSVIFLIMLFRGRAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=243811 CKF48_RS08140 WP_095370865.1 1611645..1612601(-) (ceuB) [Cytobacillus kochii strain BDGP4]
ATGAGAATATGGATGTTAATCTGTGCAGCTATAGTCCTGTCATTTATATCACTATTTATCGGTGCGATTGATATTAAACC
AATGGATTTGCTAGATTGGGAGTCTGATGAAACACAAATTTTCCTGATTAGTCGTGTACCTAGATTAATAGCGATTATTT
TAGCTGGTGCAGGAATGAGTATTGCTGGATTGATTATGCAAAGTTTGAGCAGGAATAAATTTGTTTCTCCGACAACCGCG
GGAACGTTAGATGCTGCTAAACTAGGTATTATGATTTCCATGCTATTTTTTACAAACGTAACGTATACCCAGCAAGTTCT
TTTTAGTTTTGCCTTTGCGCTTGTCGGTACGATGGTATTTATGCAAATACTTGATCGTATCAAATTTAAAGATGTTATAT
TTGTTCCTCTTATTGGAATAATGTACGGGAATATTTTGTCTTCTATTACCACTTTCTTTGCGTATGAAGCTGATATCCTG
CAAAATATATCTTCATGGTTAATGGGGAGTTTTACTTTAGTAATCTCGGGCCGATATGAACTTTTATATGTAAGTATCCC
AGTATTCATTTTGGCTTATTTATATGCTAATAAATTTACCGTTGCAGGTATGGGAGAAGAATTTGCGAAAAATTTAGGAT
TGAGCTATAAGTGGGTTTTAAATATTGGTCTCATCCTTGTTGCTATCATTGCTACGACTGTTGTACTAACTGTCGGTGTC
ATTCCGTTCTTAGGCTTAATTGTACCTAATATCGTGTCTCTGTATATGGGAGATAATCTCCGAAAAACGATTCCACATAC
GGCTCTTTTAGGCGTTGTGTTCTTATTAATTTGTGATATTATTGGGCGCATTGTGATCCACCCTTATGAGATACCGGTGA
ACGTAACAGTTGCGGTAATCGGTAGTGTCATCTTCTTAATTATGTTATTTAGGGGGAGAGCATATGCGAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.371

0.535

Multiple sequence alignment