Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   CKF48_RS02170 Genome accession   NZ_CP022983
Coordinates   432423..433388 (-) Length   321 a.a.
NCBI ID   WP_095369816.1    Uniprot ID   -
Organism   Cytobacillus kochii strain BDGP4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 427423..438388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKF48_RS02145 (CKF48_02145) - 428558..429340 (-) 783 WP_157733743.1 DUF2268 domain-containing protein -
  CKF48_RS02150 (CKF48_02150) fabF 429480..430718 (-) 1239 WP_095369812.1 beta-ketoacyl-ACP synthase II -
  CKF48_RS02155 (CKF48_02155) - 430765..431697 (-) 933 WP_095369813.1 beta-ketoacyl-ACP synthase III -
  CKF48_RS02160 (CKF48_02160) - 431936..432190 (+) 255 WP_095369814.1 hypothetical protein -
  CKF48_RS02165 (CKF48_02165) comZ 432219..432410 (-) 192 WP_095369815.1 ComZ family protein Regulator
  CKF48_RS02170 (CKF48_02170) med 432423..433388 (-) 966 WP_095369816.1 BMP family ABC transporter substrate-binding protein Regulator
  CKF48_RS02175 (CKF48_02175) - 433509..434270 (-) 762 WP_095369817.1 hypothetical protein -
  CKF48_RS02180 (CKF48_02180) - 434417..435151 (-) 735 WP_095369818.1 hydrolase -
  CKF48_RS02185 (CKF48_02185) - 435374..435565 (+) 192 WP_095369819.1 YjzD family protein -
  CKF48_RS02190 (CKF48_02190) clpB 435652..438246 (-) 2595 WP_095369820.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 35479.02 Da        Isoelectric Point: 4.6719

>NTDB_id=243801 CKF48_RS02170 WP_095369816.1 432423..433388(-) (med) [Cytobacillus kochii strain BDGP4]
MKRALIKWGSLVLCLLLLSSCGQVFSGGQLQKAGLLVPDTINDQVWGTKGYKGLLKIQSTYDIDVYYKEGMNSQLVVERA
VKEFSKKGVNLIFGHGNEYAEYFNQISAQYPDIQFISFNGDAQNENTTSLNFEGYAMGFFGGMVAGEMTSTNIVGIIAAF
EWQPEVKGFIDGVNFQNDEANVKIHYVENWDDAHKAAGLMDKLVIEKADVVYPAGDGYNVPVIEKVKEHGLYAIGYVSDQ
SHLGKSAVLTSTIQHVDHLYEIVAEQFHNGELQSGNLSFDFQDDVISLGAYSPELSPTFIQQLNAAVKKYKETGNLPKEP
S

Nucleotide


Download         Length: 966 bp        

>NTDB_id=243801 CKF48_RS02170 WP_095369816.1 432423..433388(-) (med) [Cytobacillus kochii strain BDGP4]
ATGAAGAGAGCTTTAATTAAGTGGGGGAGTTTGGTTCTATGCCTTCTTCTATTATCGTCATGTGGACAGGTATTTTCTGG
GGGTCAGCTGCAAAAGGCTGGCTTATTAGTGCCGGATACCATTAATGATCAAGTGTGGGGTACGAAAGGGTATAAAGGCC
TACTCAAGATACAGTCTACTTATGATATTGATGTGTATTATAAAGAAGGAATGAACTCACAACTCGTTGTCGAAAGAGCG
GTAAAGGAATTTTCAAAAAAAGGGGTCAATTTAATTTTTGGACATGGAAATGAATATGCAGAGTACTTTAATCAAATATC
AGCACAATATCCAGACATTCAGTTTATAAGCTTTAACGGGGACGCACAAAATGAAAATACGACAAGTTTAAATTTTGAAG
GATATGCAATGGGCTTTTTCGGAGGTATGGTGGCTGGTGAGATGACATCTACTAATATTGTTGGTATTATTGCGGCATTT
GAATGGCAGCCAGAAGTAAAAGGTTTTATTGATGGTGTGAACTTTCAAAATGATGAAGCAAATGTTAAAATACATTATGT
TGAAAATTGGGATGATGCCCATAAGGCTGCGGGGTTAATGGACAAGTTGGTCATAGAAAAAGCAGATGTCGTTTATCCAG
CAGGTGATGGATATAATGTCCCTGTCATTGAAAAAGTAAAAGAGCATGGTTTATATGCCATTGGTTATGTTTCTGACCAA
TCCCATTTAGGAAAATCAGCAGTATTAACAAGTACAATTCAACATGTTGACCATTTGTATGAAATAGTAGCAGAACAATT
TCATAATGGAGAACTGCAGTCTGGGAACCTTTCTTTTGACTTTCAAGATGATGTCATTTCATTAGGTGCGTATAGTCCAG
AATTATCTCCAACCTTTATTCAACAATTAAATGCAGCAGTAAAAAAATATAAAGAAACAGGTAATTTACCGAAAGAACCA
TCATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

54.098

95.016

0.514

Multiple sequence alignment