Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CKF48_RS02050 Genome accession   NZ_CP022983
Coordinates   405985..407808 (-) Length   607 a.a.
NCBI ID   WP_095369792.1    Uniprot ID   -
Organism   Cytobacillus kochii strain BDGP4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 400985..412808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKF48_RS02020 (CKF48_02020) - 401225..401863 (-) 639 WP_095369786.1 GTP pyrophosphokinase family protein -
  CKF48_RS02025 (CKF48_02025) - 401978..402352 (-) 375 WP_095369787.1 hypothetical protein -
  CKF48_RS02030 (CKF48_02030) - 402515..403105 (+) 591 WP_180316983.1 CYTH domain-containing protein -
  CKF48_RS02035 (CKF48_02035) - 403130..403777 (+) 648 WP_095369789.1 lytic transglycosylase domain-containing protein -
  CKF48_RS02040 (CKF48_02040) - 404054..404461 (+) 408 WP_095369790.1 globin -
  CKF48_RS02045 (CKF48_02045) - 404458..405330 (+) 873 WP_095369791.1 ClpXP adapter SpxH family protein -
  CKF48_RS02050 (CKF48_02050) pepF 405985..407808 (-) 1824 WP_095369792.1 oligoendopeptidase F Regulator
  CKF48_RS02055 (CKF48_02055) - 407924..409069 (-) 1146 WP_095369793.1 competence protein CoiA -
  CKF48_RS02060 (CKF48_02060) mecA 409172..409822 (-) 651 WP_095369794.1 adaptor protein MecA -
  CKF48_RS02065 (CKF48_02065) spxA 410490..410885 (-) 396 WP_095369795.1 transcriptional regulator SpxA -
  CKF48_RS02070 (CKF48_02070) - 411444..412019 (-) 576 WP_095369796.1 GNAT family N-acetyltransferase -
  CKF48_RS02075 (CKF48_02075) - 412261..412446 (+) 186 WP_095369797.1 hypothetical protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70034.71 Da        Isoelectric Point: 4.7657

>NTDB_id=243796 CKF48_RS02050 WP_095369792.1 405985..407808(-) (pepF) [Cytobacillus kochii strain BDGP4]
MANDSTVKKLPTRNEVPVEETWRLEDIFSSDDEWNKEFNEVKELSKEAGKFKGMLHEGAEVLYDVLQYQDHLLSRIVKLF
TYARMRYDQDTTNATYQSLDDKIKGLYSVVASELAFIVPEILAIDEDQLAQYIAEKEELKMYEHALEEINLQRPHVLTAE
KEALLAQASEVMDASSNTFGMLNNADLTFPSIKNEEGEEVEVTHGRFINFLESDDQRVRRDAFRAMYTTYGQFRNTFAST
LSGNVKRNNFNAKVRNYQSARHAALSANNIPESVYDQLVSTINDHLHLLHRYVKLRKKVLQLDELHMYDLYTPLVKDVKM
AITYDEAKKLMIEGLAPLGEEYRSILEEGLQNRWVDVWENKGKRSGAYSSGAYGTNPYILLNWQDNINNLFTLTHEFGHS
VHSYYTRKSQPYAYGDYSIFVAEVASTCNEALLNDHLLKTIDDDKKRLFLLNHFLEGFRGTVFRQTMFAEFEHEIHQMAQ
NNEALTADALTEKYYELNKKYFGGEDIIIDEEIGLEWSRIPHFYYDYYVYQYATGYSAATALSEQILTEGKPAVDRFIGF
LKAGSSDYPIEVLKKAGVDMTSSEPIKAACKVFEEKLNEMEQLLETI

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=243796 CKF48_RS02050 WP_095369792.1 405985..407808(-) (pepF) [Cytobacillus kochii strain BDGP4]
ATGGCTAACGATTCTACAGTTAAGAAACTACCAACAAGAAACGAGGTTCCAGTTGAAGAAACTTGGCGTCTTGAAGATAT
TTTTTCAAGTGACGATGAATGGAATAAAGAATTTAATGAAGTAAAAGAGTTATCTAAAGAAGCAGGCAAGTTTAAAGGGA
TGTTGCATGAAGGTGCAGAGGTTCTTTATGATGTTTTACAATATCAAGATCACTTACTTTCTCGTATTGTGAAGCTCTTT
ACATATGCAAGAATGAGATATGATCAAGATACAACAAATGCAACGTATCAAAGTTTAGATGATAAAATCAAAGGGCTGTA
TTCAGTGGTTGCTAGTGAACTTGCTTTCATAGTGCCAGAAATTCTTGCCATTGATGAAGATCAATTAGCACAGTATATAG
CCGAGAAAGAAGAATTAAAAATGTATGAACATGCACTTGAAGAAATCAATCTTCAACGTCCTCATGTACTTACAGCGGAA
AAAGAAGCCTTACTTGCACAAGCATCAGAAGTAATGGATGCATCAAGTAATACTTTTGGAATGTTAAATAATGCTGATTT
AACATTCCCATCGATTAAAAACGAAGAGGGAGAAGAGGTTGAAGTGACACACGGTCGATTTATCAACTTCCTAGAGAGTG
ATGATCAGCGTGTACGTCGAGATGCTTTTCGTGCGATGTATACAACCTATGGACAGTTTCGTAATACATTCGCTAGTACG
TTAAGTGGAAATGTGAAAAGAAATAATTTCAATGCAAAGGTACGAAACTATCAATCAGCTCGACATGCCGCTTTATCAGC
GAATAATATACCAGAATCTGTTTATGATCAATTAGTAAGCACGATTAATGATCATCTTCATTTGCTTCATCGATATGTGA
AACTAAGGAAAAAAGTTTTGCAATTAGATGAATTGCACATGTATGATCTCTACACACCTTTAGTAAAGGATGTAAAAATG
GCGATTACTTATGATGAAGCCAAAAAGCTAATGATTGAAGGCTTAGCTCCTTTAGGTGAGGAATATCGCAGTATTTTGGA
AGAGGGTCTACAGAATCGCTGGGTGGATGTTTGGGAGAATAAAGGGAAGAGAAGTGGTGCCTATTCTTCTGGTGCTTATG
GTACGAATCCTTATATCCTCCTTAATTGGCAAGATAATATCAATAACCTCTTCACATTAACACATGAATTTGGTCATTCT
GTTCATAGTTATTACACACGTAAGTCGCAACCATATGCTTATGGTGATTATTCCATTTTTGTGGCTGAAGTAGCATCAAC
TTGTAATGAGGCGTTATTAAATGATCATTTATTAAAAACGATTGATGATGATAAAAAACGTTTATTCTTACTCAATCATT
TCTTAGAAGGGTTTAGAGGAACAGTATTCCGTCAAACGATGTTTGCAGAATTTGAGCATGAGATTCACCAAATGGCTCAA
AATAATGAAGCTTTAACAGCAGATGCACTTACTGAAAAGTATTATGAACTGAACAAGAAATACTTTGGTGGTGAGGATAT
CATTATTGATGAGGAAATTGGATTAGAATGGTCAAGAATCCCTCACTTCTATTACGATTATTATGTATACCAATATGCTA
CCGGTTATAGTGCTGCAACGGCTTTAAGTGAGCAAATTTTAACAGAAGGAAAACCGGCAGTTGATCGCTTTATTGGTTTC
CTTAAAGCAGGTAGTTCTGATTACCCGATAGAAGTGCTTAAAAAAGCGGGTGTGGATATGACAAGTTCAGAACCGATTAA
GGCAGCATGTAAAGTGTTTGAAGAAAAGTTAAATGAGATGGAACAATTGTTAGAAACGATTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

98.188

0.491

Multiple sequence alignment