Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CJZ72_RS08820 Genome accession   NZ_CP022930
Coordinates   1852725..1854407 (+) Length   560 a.a.
NCBI ID   WP_095443769.1    Uniprot ID   -
Organism   Enterococcus durans strain BDGP3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1847725..1859407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ72_RS08790 (CJZ72_08780) - 1848028..1848873 (+) 846 WP_081133901.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  CJZ72_RS08795 (CJZ72_08785) xseA 1848874..1850235 (+) 1362 WP_081133900.1 exodeoxyribonuclease VII large subunit -
  CJZ72_RS08800 (CJZ72_08790) - 1850216..1850440 (+) 225 WP_081133899.1 exodeoxyribonuclease VII small subunit -
  CJZ72_RS08805 (CJZ72_08795) - 1850440..1851324 (+) 885 WP_081133898.1 polyprenyl synthetase family protein -
  CJZ72_RS08810 (CJZ72_08800) - 1851339..1852157 (+) 819 WP_081133897.1 TlyA family RNA methyltransferase -
  CJZ72_RS08815 (CJZ72_08805) argR 1852258..1852707 (+) 450 WP_005881063.1 arginine repressor -
  CJZ72_RS08820 (CJZ72_08810) recN 1852725..1854407 (+) 1683 WP_095443769.1 DNA repair protein RecN Machinery gene
  CJZ72_RS08825 (CJZ72_08815) - 1854591..1854707 (-) 117 WP_005881061.1 DUF4044 domain-containing protein -
  CJZ72_RS08830 (CJZ72_08820) - 1854779..1855735 (-) 957 WP_081133895.1 magnesium transporter CorA family protein -
  CJZ72_RS08835 (CJZ72_08825) - 1855956..1856324 (+) 369 WP_005881059.1 DUF3397 domain-containing protein -
  CJZ72_RS08840 (CJZ72_08830) mraZ 1856497..1856928 (+) 432 WP_005881057.1 division/cell wall cluster transcriptional repressor MraZ -
  CJZ72_RS08845 (CJZ72_08835) rsmH 1856948..1857907 (+) 960 WP_081133894.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  CJZ72_RS08850 (CJZ72_08840) ftsL 1857912..1858307 (+) 396 WP_005881053.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63406.78 Da        Isoelectric Point: 4.6662

>NTDB_id=243544 CJZ72_RS08820 WP_095443769.1 1852725..1854407(+) (recN) [Enterococcus durans strain BDGP3]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRSSSDYIRQGADKCILEGLFEWPKQDGFSALM
NELGIESDGDNLIVRRDMSLTGKNICRVNGHIVTLANLRKIGSYLVDIQGQNEHQELLQPEAHLVLLDRFGDNEFQRKKK
NYQKEFSRYRELERQVRKIQKNEKSFVQRIDMLHFQQEEIAATQLEVGEEEQLSEEREKLSNYQKIVDSLSSGYSALSGE
ERSSVDNVGLAVAELQSIAHLDNEYEAIFENVQSAYYLLQDAIGDMSRQIDLLELDENRLEEVNQRLELIRQLKRKYGES
IEAILNYYDDITQELASSDFSEGQLEKMKSELAEKEEKLQKQAVELHEIRKKIAKGLEQSILKELKSLYMENTEFEVRFS
KSDKAQLDMNGFDQVEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISRYSQVLCITHLPQVAAVADYQYYIKKDVIKGRTQTSVAELAPAQREEEIARMLAGSEITPLTMEHAKELLRLAKQD

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=243544 CJZ72_RS08820 WP_095443769.1 1852725..1854407(+) (recN) [Enterococcus durans strain BDGP3]
ATGTTACAAGAAATCAGTATTACTAATTTTGCGATTATTCCTGAACTGCGGTTGTCTTTTCATGAGGGAATGACGGCACT
CACAGGTGAAACAGGCGCAGGAAAATCAATTATTATTGATGCTCTTGGGCTGTTGGCAGGAGGAAGAAGCTCAAGTGACT
ATATCCGACAAGGTGCAGATAAGTGTATTCTGGAAGGTTTATTTGAGTGGCCTAAACAAGACGGTTTTTCTGCATTGATG
AATGAGTTAGGAATCGAATCTGATGGAGACAACCTGATTGTTCGAAGAGATATGTCTTTGACAGGGAAAAATATTTGTCG
TGTCAATGGGCACATCGTAACATTAGCTAATCTAAGAAAAATAGGCAGTTATTTGGTAGATATCCAAGGCCAAAATGAAC
ATCAGGAATTGTTACAACCAGAGGCACACTTAGTTTTACTCGATCGTTTTGGCGATAATGAATTTCAGCGTAAGAAGAAA
AATTATCAGAAAGAGTTTTCGCGCTACCGCGAACTTGAACGGCAAGTTCGTAAGATCCAGAAAAATGAAAAATCTTTTGT
CCAACGAATTGACATGCTTCATTTTCAGCAAGAAGAAATCGCTGCGACACAATTAGAAGTAGGCGAAGAAGAACAGTTAA
GTGAAGAGCGAGAAAAATTAAGTAATTATCAAAAAATAGTGGATAGTTTATCTAGTGGCTATAGTGCGCTGAGCGGGGAA
GAGCGGAGCAGTGTAGACAATGTAGGATTGGCAGTAGCTGAGCTGCAAAGTATCGCGCACTTGGATAATGAGTACGAGGC
GATTTTTGAAAATGTCCAAAGCGCCTATTATTTATTGCAAGATGCAATCGGTGATATGAGTCGTCAAATCGACTTGCTAG
AGTTAGATGAGAATCGCTTAGAAGAAGTGAATCAACGATTAGAGCTGATCCGTCAATTAAAGCGTAAATATGGGGAATCG
ATCGAAGCCATCTTGAACTATTATGATGATATCACTCAGGAACTAGCCTCTTCCGATTTTTCCGAAGGACAACTTGAAAA
AATGAAAAGTGAACTGGCTGAAAAAGAAGAGAAACTTCAGAAACAGGCAGTAGAATTACATGAGATACGAAAGAAAATCG
CTAAAGGATTAGAGCAATCTATCTTAAAAGAATTAAAAAGTCTTTATATGGAAAATACTGAATTCGAAGTACGCTTTTCA
AAATCTGACAAGGCACAACTAGATATGAATGGATTTGACCAAGTGGAGTTCTACATAACCACGAATCCTGGGGAGCCTTT
GAAACCTTTAGTCAAAGTAGCTTCTGGCGGCGAGCTTTCTCGGATGTTATTAGCATTGAAGACGATCTTTTCTTCTGAGC
AAGGAGTAACTAGTATTATTTTTGATGAAGTAGATACAGGGGTCAGTGGAAGAGTCGCACAAGCAATCGCAGATAAAATC
TCACAAATCTCACGTTATTCACAGGTGTTATGTATTACACATCTTCCTCAAGTAGCAGCCGTGGCTGACTATCAGTATTA
CATTAAAAAAGATGTCATCAAAGGGCGCACTCAAACCTCTGTAGCAGAATTGGCGCCAGCACAGCGTGAAGAAGAAATTG
CACGGATGTTGGCAGGAAGTGAAATCACCCCTTTAACGATGGAACATGCAAAAGAATTACTACGCTTAGCGAAACAAGAC
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.126

100

0.502

Multiple sequence alignment