Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CJZ79_RS15935 Genome accession   NZ_CP022912
Coordinates   3013453..3014082 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O6:H16 strain 2011EL-1370-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3008453..3019082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ79_RS15920 helD 3008695..3010749 (-) 2055 WP_001295354.1 DNA helicase IV -
  CJZ79_RS15925 yccF 3010872..3011318 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CJZ79_RS15930 yccS 3011328..3013490 (+) 2163 WP_072145235.1 YccS family putative transporter -
  CJZ79_RS15935 sxy/tfoX 3013453..3014082 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CJZ79_RS15940 sulA 3014301..3014810 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CJZ79_RS15950 ompA 3015167..3016207 (+) 1041 WP_000750416.1 porin OmpA -
  CJZ79_RS15955 matP 3016283..3016735 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CJZ79_RS15960 ycbZ 3016921..3018681 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=243402 CJZ79_RS15935 WP_000839153.1 3013453..3014082(-) (sxy/tfoX) [Escherichia coli O6:H16 strain 2011EL-1370-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=243402 CJZ79_RS15935 WP_000839153.1 3013453..3014082(-) (sxy/tfoX) [Escherichia coli O6:H16 strain 2011EL-1370-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment