Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSYR_RS08500 Genome accession   NC_007005
Coordinates   1837974..1838690 (+) Length   238 a.a.
NCBI ID   WP_011267143.1    Uniprot ID   A0AAJ4E3K1
Organism   Pseudomonas syringae pv. syringae B728a     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1832974..1843690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYR_RS08480 (Psyr_1629) - 1833054..1833677 (+) 624 WP_011267140.1 glutathione S-transferase -
  PSYR_RS08485 (Psyr_1630) - 1833861..1834793 (+) 933 WP_011267141.1 ABC transporter ATP-binding protein -
  PSYR_RS08490 (Psyr_1631) - 1834790..1835578 (+) 789 WP_003421319.1 ABC transporter permease -
  PSYR_RS08495 (Psyr_1632) comA 1835715..1837931 (+) 2217 WP_011267142.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSYR_RS08500 (Psyr_1633) exbB 1837974..1838690 (+) 717 WP_011267143.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSYR_RS08505 (Psyr_1634) - 1838687..1839118 (+) 432 WP_003317468.1 ExbD/TolR family protein -
  PSYR_RS08510 (Psyr_1635) lpxK 1839118..1840113 (+) 996 WP_011267144.1 tetraacyldisaccharide 4'-kinase -
  PSYR_RS08515 - 1840131..1840316 (+) 186 WP_002552679.1 Trm112 family protein -
  PSYR_RS08520 (Psyr_1636) kdsB 1840313..1841077 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSYR_RS08525 (Psyr_1637) murB 1841112..1842131 (+) 1020 WP_011267145.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25834.33 Da        Isoelectric Point: 7.3261

>NTDB_id=24332 PSYR_RS08500 WP_011267143.1 1837974..1838690(+) (exbB) [Pseudomonas syringae pv. syringae B728a]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEQKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=24332 PSYR_RS08500 WP_011267143.1 1837974..1838690(+) (exbB) [Pseudomonas syringae pv. syringae B728a]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCTTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAACAGAAGCTGGACAGCGAAAAGCTCAAGCAGCTGCGCGCTGAC
TCGCCGCTGGGCGAAATCCTTGCCGCAGGGCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCTGCCCGGGTCATTCATGAACTGGAGCGCTACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGTTGCTTG
GTTTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGCTCCGGGGCCACCGCCAATGCCGGTGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACCGCGTCGGGTCTTATCGTAGCGATCCCGGCGATTTTCTTTCATCG
CTTTCTGCAGAGCCGCGTCGATGAGCTGGTAGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.095

88.235

0.689

Multiple sequence alignment