Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   STU_RS17120 Genome accession   NC_006448
Coordinates   1464544..1465287 (-) Length   247 a.a.
NCBI ID   WP_011226469.1    Uniprot ID   Q5M2Y9
Organism   Streptococcus thermophilus LMG 18311     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459544..1470287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STU_RS17090 (stu1646) - 1459815..1460759 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  STU_RS17095 (stu1647) sepM 1460844..1461920 (-) 1077 WP_011226464.1 SepM family pheromone-processing serine protease Regulator
  STU_RS17100 (stu1648) coaD 1461898..1462395 (-) 498 WP_011226465.1 pantetheine-phosphate adenylyltransferase -
  STU_RS17105 (stu1649) rsmD 1462429..1463028 (-) 600 Protein_1438 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  STU_RS17110 (stu1650) trxB 1463119..1464072 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  STU_RS17115 (stu1651) - 1464105..1464329 (-) 225 WP_011226468.1 DUF4059 family protein -
  STU_RS17120 (stu1652) amiE 1464544..1465287 (-) 744 WP_011226469.1 amino acid ABC transporter ATP-binding protein Regulator
  STU_RS17125 (stu1653) - 1465287..1466033 (-) 747 WP_095559509.1 amino acid ABC transporter permease -
  STU_RS17130 (stu1654) - 1466427..1467257 (-) 831 WP_041828322.1 transporter substrate-binding domain-containing protein -
  STU_RS17135 (stu1655) - 1467717..1467950 (-) 234 WP_002947030.1 hypothetical protein -
  STU_RS17140 (stu1656) dinB 1468248..1469351 (-) 1104 WP_011226472.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27763.89 Da        Isoelectric Point: 5.4718

>NTDB_id=24298 STU_RS17120 WP_011226469.1 1464544..1465287(-) (amiE) [Streptococcus thermophilus LMG 18311]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFETITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELTKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=24298 STU_RS17120 WP_011226469.1 1464544..1465287(-) (amiE) [Streptococcus thermophilus LMG 18311]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGAAACAATTACCAAGGAGCAAATCCTTACCCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCACTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364

Multiple sequence alignment