Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   CGP92_RS07860 Genome accession   NZ_CP022896
Coordinates   1594277..1595347 (-) Length   356 a.a.
NCBI ID   WP_000776412.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 277     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1589277..1600347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGP92_RS07820 (CGP92_01450) gcvPA 1589454..1590800 (-) 1347 WP_063636320.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  CGP92_RS07825 (CGP92_01451) gcvT 1590820..1591911 (-) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  CGP92_RS07830 (CGP92_01452) - 1592070..1592594 (-) 525 WP_115300159.1 shikimate kinase -
  CGP92_RS07835 - 1592584..1592730 (-) 147 WP_001789879.1 hypothetical protein -
  CGP92_RS07840 (CGP92_01453) comGF 1592827..1593324 (-) 498 WP_001794055.1 competence type IV pilus minor pilin ComGF Machinery gene
  CGP92_RS07845 (CGP92_01454) comGE 1593242..1593541 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  CGP92_RS07850 (CGP92_01455) comGD 1593528..1593974 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  CGP92_RS07855 (CGP92_01456) comGC 1593952..1594263 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  CGP92_RS07860 (CGP92_01457) comGB 1594277..1595347 (-) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  CGP92_RS07865 (CGP92_01458) comGA 1595319..1596293 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  CGP92_RS07870 (CGP92_01459) - 1596345..1596968 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  CGP92_RS07875 (CGP92_01460) - 1596965..1597294 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  CGP92_RS07880 (CGP92_01461) - 1597294..1598280 (-) 987 WP_000161314.1 ROK family glucokinase -
  CGP92_RS07885 - 1598277..1598480 (-) 204 WP_000087561.1 YqgQ family protein -
  CGP92_RS07890 (CGP92_01462) - 1598461..1599924 (-) 1464 WP_001017873.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41429.85 Da        Isoelectric Point: 10.1030

>NTDB_id=242866 CGP92_RS07860 WP_000776412.1 1594277..1595347(-) (comGB) [Staphylococcus aureus strain 277]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNKILSLIG
YSDTIVLQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=242866 CGP92_RS07860 WP_000776412.1 1594277..1595347(-) (comGB) [Staphylococcus aureus strain 277]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATAAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCCTGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
GATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994

Multiple sequence alignment