Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   STU_RS14260 Genome accession   NC_006448
Coordinates   906381..907451 (-) Length   356 a.a.
NCBI ID   WP_011225974.1    Uniprot ID   Q5M4E9
Organism   Streptococcus thermophilus LMG 18311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 901381..912451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STU_RS14245 (stu1005) pstB 902106..902864 (+) 759 WP_011225971.1 phosphate ABC transporter ATP-binding protein PstB -
  STU_RS14250 (stu1006) phoU 902892..903545 (+) 654 WP_041827032.1 phosphate signaling complex protein PhoU -
  STU_RS14255 (stu1007) - 903679..906219 (+) 2541 WP_011225973.1 M1 family metallopeptidase -
  STU_RS14260 (stu1008) xerS 906381..907451 (-) 1071 WP_011225974.1 tyrosine recombinase XerS Machinery gene
  STU_RS14265 (stu1009) - 907676..908665 (-) 990 WP_002950753.1 lipoate--protein ligase -
  STU_RS14270 (stu1010) - 908848..909402 (+) 555 WP_011225975.1 hypothetical protein -
  STU_RS19440 (stu1011) - 909465..909899 (+) 435 WP_156703473.1 hypothetical protein -
  STU_RS14280 (stu1012) glgP 910005..912269 (-) 2265 WP_011225977.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41560.72 Da        Isoelectric Point: 9.6858

>NTDB_id=24276 STU_RS14260 WP_011225974.1 906381..907451(-) (xerS) [Streptococcus thermophilus LMG 18311]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSCLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKRMVIDVTRKGGQRDS
VNMASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=24276 STU_RS14260 WP_011225974.1 906381..907451(-) (xerS) [Streptococcus thermophilus LMG 18311]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACCATTAA
TCGTACGCTTTCAGCTCTATCTTGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTACTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATTAATTTAAAAAGGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTTAATATGGCGAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M4E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.022

100

0.82

Multiple sequence alignment