Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   CGP87_RS10590 Genome accession   NZ_CP022892
Coordinates   2043175..2043891 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain 54     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2038175..2048891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGP87_RS10560 (CGP87_01911) - 2038394..2039020 (+) 627 WP_115312399.1 nitroreductase family protein -
  CGP87_RS10565 (CGP87_01912) - 2039381..2040166 (+) 786 WP_000867960.1 carbon-nitrogen family hydrolase -
  CGP87_RS14540 (CGP87_01913) - 2040763..2040897 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  CGP87_RS10575 (CGP87_01914) agrB 2041133..2041702 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  CGP87_RS10580 (CGP87_01915) - 2041699..2041839 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  CGP87_RS10585 (CGP87_01916) - 2041864..2043156 (+) 1293 WP_205301592.1 GHKL domain-containing protein -
  CGP87_RS10590 (CGP87_01917) agrA 2043175..2043891 (+) 717 WP_000688492.1 LytTR family DNA-binding domain-containing protein Regulator
  CGP87_RS10595 - 2043963..2044070 (+) 108 WP_001790167.1 hypothetical protein -
  CGP87_RS10600 (CGP87_01918) - 2044258..2045217 (-) 960 WP_001253312.1 carbohydrate kinase -
  CGP87_RS10605 (CGP87_01919) - 2045214..2046698 (-) 1485 WP_115285409.1 sucrose-6-phosphate hydrolase -
  CGP87_RS10610 (CGP87_01920) - 2046847..2047797 (-) 951 WP_000790330.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=242712 CGP87_RS10590 WP_000688492.1 2043175..2043891(+) (agrA) [Staphylococcus aureus strain 54]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=242712 CGP87_RS10590 WP_000688492.1 2043175..2043891(+) (agrA) [Staphylococcus aureus strain 54]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment