Detailed information NTG0242672

Bioinformatically predicted

Overview

• Name: abrB
• Type: Regulator
• Locus tag: CJZ71_RS20550
• Genome accession: NZ_CP022891
• Coordinates: 3869542..3869820 (+)
• Length: 92 a.a.
• NCBI ID: WP_003244728.1
• Uniprot ID: A0A199WGU6
• Organism: Bacillus subtilis strain DKU_NT_03
• Function: repression of comK; repression of rok (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	3865192..3871332	3869542..3869820	within	0

Gene organization within MGE regions

Location: 3865192..3871332

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJZ71_RS20530 (CJZ71_20530)	-	3865192..3866544 (-)	1353	WP_014478984.1	IS1182 family transposase	-
CJZ71_RS20535 (CJZ71_20535)	ampS	3866674..3867906 (-)	1233	WP_003232341.1	aminopeptidase	-
CJZ71_RS20540 (CJZ71_20540)	ykpC	3868016..3868150 (-)	135	WP_003238865.1	protein YkpC	-
CJZ71_RS20545 (CJZ71_20545)	mreBH	3868251..3869258 (-)	1008	WP_026113694.1	cell shape-determining protein MreBH	-
CJZ71_RS20550 (CJZ71_20550)	abrB	3869542..3869820 (+)	279	WP_003244728.1	transcriptional regulator AbhA	Regulator
CJZ71_RS20555 (CJZ71_20555)	-	3870208..3871332 (+)	1125	WP_014478926.1	IS4-like element IS4Bsu1 family transposase	-

Sequence

Protein

• Length: 92 a.a.
• Molecular weight: 10256.07 Da
• Isoelectric Point: 5.8808

>NTDB_id=242672 CJZ71_RS20550 WP_003244728.1 3869542..3869820(+) (abrB) [Bacillus subtilis strain DKU_NT_03]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide

• Length: 279 bp

>NTDB_id=242672 CJZ71_RS20550 WP_003244728.1 3869542..3869820(+) (abrB) [Bacillus subtilis strain DKU_NT_03]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

• AbrB C-terminal domain (AbrB_C) (53-88)

• Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin) (8-51)

3D structure

• AlphaFold DB: A0A199WGU6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
abrB	Bacillus subtilis subsp. subtilis str. 168	58.242	98.913	0.576