Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   CJZ71_RS20320 Genome accession   NZ_CP022891
Coordinates   3826747..3827211 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain DKU_NT_03     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3821747..3832211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ71_RS20295 (CJZ71_20295) - 3822442..3823566 (+) 1125 WP_014478926.1 IS4-like element IS4Bsu1 family transposase -
  CJZ71_RS20300 (CJZ71_20300) - 3823718..3824047 (+) 330 Protein_3953 ATP-binding protein -
  CJZ71_RS20305 (CJZ71_20305) dapX 3824044..3825225 (-) 1182 WP_014479654.1 aminotransferase A -
  CJZ71_RS20310 (CJZ71_20310) - 3825427..3825588 (-) 162 WP_003245246.1 hypothetical protein -
  CJZ71_RS20315 (CJZ71_20315) cheV 3825792..3826703 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  CJZ71_RS20320 (CJZ71_20320) kre 3826747..3827211 (-) 465 WP_003232406.1 YkyB family protein Regulator
  CJZ71_RS20325 (CJZ71_20325) ykuC 3827337..3828629 (-) 1293 WP_014479656.1 MFS transporter -
  CJZ71_RS20330 (CJZ71_20330) ltdD 3828705..3829199 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  CJZ71_RS20335 (CJZ71_20335) ppeE 3829256..3830116 (-) 861 WP_015483175.1 metallophosphoesterase -
  CJZ71_RS20340 (CJZ71_20340) fadH 3830259..3831023 (+) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=242670 CJZ71_RS20320 WP_003232406.1 3826747..3827211(-) (kre) [Bacillus subtilis strain DKU_NT_03]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=242670 CJZ71_RS20320 WP_003232406.1 3826747..3827211(-) (kre) [Bacillus subtilis strain DKU_NT_03]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment