Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CJZ71_RS12175 Genome accession   NZ_CP022891
Coordinates   2263554..2264666 (+) Length   370 a.a.
NCBI ID   WP_014478578.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_NT_03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2246344..2288558 2263554..2264666 within 0


Gene organization within MGE regions


Location: 2246344..2288558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ71_RS12085 (CJZ71_12085) yyzM 2246344..2246550 (-) 207 WP_003226838.1 DUF951 family protein -
  CJZ71_RS12090 (CJZ71_12090) - 2246644..2247660 (-) 1017 WP_010886647.1 membrane protein -
  CJZ71_RS12095 (CJZ71_12095) yyaC 2248120..2248737 (+) 618 WP_003243890.1 spore protease YyaC -
  CJZ71_RS12100 (CJZ71_12100) - 2248854..2250004 (+) 1151 WP_087614170.1 IS3 family transposase -
  CJZ71_RS12105 (CJZ71_12105) spo0J 2250067..2250915 (-) 849 WP_003226832.1 stage 0 sporulation protein Spo0J -
  CJZ71_RS12110 (CJZ71_12110) soj 2250908..2251669 (-) 762 WP_003219244.1 sporulation initiation inhibitor protein Soj -
  CJZ71_RS12115 (CJZ71_12115) yyaB 2251917..2252357 (+) 441 WP_014481510.1 PH domain-containing protein -
  CJZ71_RS12120 (CJZ71_12120) noc 2252408..2253259 (-) 852 WP_003226829.1 nucleoid occlusion protein -
  CJZ71_RS12125 (CJZ71_12125) rsmG 2253381..2254100 (-) 720 WP_069837911.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  CJZ71_RS12130 (CJZ71_12130) mnmG 2254114..2256000 (-) 1887 WP_003226825.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  CJZ71_RS12135 (CJZ71_12135) mnmE 2256022..2257401 (-) 1380 WP_014478576.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  CJZ71_RS12140 (CJZ71_12140) jag 2257712..2258338 (-) 627 WP_069837912.1 RNA-binding cell elongation regulator Jag/EloR -
  CJZ71_RS12145 (CJZ71_12145) spoIIIJ 2258335..2259120 (-) 786 WP_010886648.1 YidC family membrane integrase SpoIIIJ -
  CJZ71_RS12150 (CJZ71_12150) rnpA 2259264..2259614 (-) 351 WP_014481515.1 ribonuclease P protein component -
  CJZ71_RS12155 (CJZ71_12155) rpmH 2259766..2259900 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  CJZ71_RS12160 (CJZ71_12160) dnaA 2260527..2261867 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  CJZ71_RS12165 (CJZ71_12165) dnaN 2262056..2263192 (+) 1137 WP_003226811.1 DNA polymerase III subunit beta -
  CJZ71_RS12170 (CJZ71_12170) rlbA 2263323..2263538 (+) 216 WP_003226810.1 ribosome maturation protein RlbA -
  CJZ71_RS12175 (CJZ71_12175) recF 2263554..2264666 (+) 1113 WP_014478578.1 DNA replication/repair protein RecF Machinery gene
  CJZ71_RS12180 (CJZ71_12180) remB 2264684..2264929 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  CJZ71_RS12185 (CJZ71_12185) gyrB 2264984..2266900 (+) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CJZ71_RS12190 (CJZ71_12190) gyrA 2267111..2269576 (+) 2466 WP_014475555.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  CJZ71_RS12220 (CJZ71_12220) yaaC 2274900..2275847 (-) 948 WP_069837173.1 YaaC family protein -
  CJZ71_RS12225 (CJZ71_12225) guaB 2275968..2277434 (+) 1467 WP_069837174.1 IMP dehydrogenase -
  CJZ71_RS12230 (CJZ71_12230) dacA 2277587..2278918 (+) 1332 WP_015482683.1 D-alanyl-D-alanine carboxypeptidase -
  CJZ71_RS12235 (CJZ71_12235) pdxS 2279115..2279999 (+) 885 WP_003247145.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  CJZ71_RS12240 (CJZ71_12240) pdxT 2280021..2280611 (+) 591 WP_069837175.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  CJZ71_RS12245 (CJZ71_12245) serS 2280933..2282210 (+) 1278 WP_021479916.1 serine--tRNA ligase -
  CJZ71_RS12255 (CJZ71_12255) dck 2282549..2283202 (-) 654 WP_003226792.1 deoxyadenosine/deoxycytidine kinase -
  CJZ71_RS12260 (CJZ71_12260) dgk 2283199..2283822 (-) 624 WP_003226790.1 deoxyguanosine kinase -
  CJZ71_RS12265 (CJZ71_12265) sleL 2283921..2285204 (-) 1284 WP_069837176.1 glycoside hydrolase family 18 protein -
  CJZ71_RS12270 (CJZ71_12270) yaaI 2285274..2285819 (-) 546 WP_069837177.1 isochorismatase family cysteine hydrolase -
  CJZ71_RS12275 (CJZ71_12275) tadA 2285905..2286390 (+) 486 WP_003226784.1 tRNA adenosine(34) deaminase TadA -
  CJZ71_RS12285 (CJZ71_12285) dnaX 2286867..2288558 (+) 1692 WP_069837178.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42304.34 Da        Isoelectric Point: 7.3660

>NTDB_id=242642 CJZ71_RS12175 WP_014478578.1 2263554..2264666(+) (recF) [Bacillus subtilis strain DKU_NT_03]
MYIQNLELSSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=242642 CJZ71_RS12175 WP_014478578.1 2263554..2264666(+) (recF) [Bacillus subtilis strain DKU_NT_03]
TTGTATATCCAGAACTTAGAACTTTCATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATTGGACAGGTTTCTCCCGTCTATCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTATAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTTACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGATTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.459

100

0.995

Multiple sequence alignment