Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CJZ71_RS09175 Genome accession   NZ_CP022891
Coordinates   1687147..1687836 (-) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_NT_03     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1682147..1692836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ71_RS09140 (CJZ71_09140) flgN 1682327..1682809 (-) 483 WP_014481048.1 flagellar protein FlgN -
  CJZ71_RS09145 (CJZ71_09145) flgM 1682825..1683091 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  CJZ71_RS09150 (CJZ71_09150) yvyF 1683172..1683591 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  CJZ71_RS09155 (CJZ71_09155) comFC 1683664..1684386 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  CJZ71_RS09160 (CJZ71_09160) comFB 1684350..1684646 (-) 297 WP_003227989.1 late competence protein ComFB -
  CJZ71_RS09165 (CJZ71_09165) comFA 1684706..1686097 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  CJZ71_RS09170 (CJZ71_09170) fakBA 1686204..1687049 (-) 846 WP_014481053.1 DegV family protein -
  CJZ71_RS09175 (CJZ71_09175) degU 1687147..1687836 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  CJZ71_RS09180 (CJZ71_09180) degS 1687919..1689076 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  CJZ71_RS09185 (CJZ71_09185) - 1689293..1689946 (+) 654 WP_014481055.1 YigZ family protein -
  CJZ71_RS09190 (CJZ71_09190) - 1689946..1690938 (+) 993 WP_014481056.1 LCP family protein -
  CJZ71_RS09195 (CJZ71_09195) - 1691536..1692000 (+) 465 WP_228394534.1 hypothetical protein -
  CJZ71_RS09200 (CJZ71_09200) - 1692049..1692504 (+) 456 WP_014481057.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=242632 CJZ71_RS09175 WP_014481054.1 1687147..1687836(-) (degU) [Bacillus subtilis strain DKU_NT_03]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=242632 CJZ71_RS09175 WP_014481054.1 1687147..1687836(-) (degU) [Bacillus subtilis strain DKU_NT_03]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment