Detailed information NTG0024260

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: VF_RS11105
• Genome accession: NC_006840
• Coordinates: 2387189..2390569 (+)
• Length: 1126 a.a.
• NCBI ID: WP_011262585.1
• Uniprot ID: -
• Organism: Aliivibrio fischeri ES114
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2382189..2395569

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VF_RS11085 (VF2134)	erpA	2382628..2382969 (-)	342	WP_005420796.1	iron-sulfur cluster insertion protein ErpA	-
VF_RS11090 (VF2135)	hemL	2383197..2384492 (+)	1296	WP_011262582.1	glutamate-1-semialdehyde 2,1-aminomutase	-
VF_RS11095 (VF2136)	-	2384801..2385886 (+)	1086	WP_011262583.1	AI-2E family transporter	-
VF_RS11100 (VF2137)	rsmC	2386004..2387023 (+)	1020	WP_011262584.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
VF_RS11105 (VF2138)	chiS	2387189..2390569 (+)	3381	WP_011262585.1	response regulator	Regulator
VF_RS11110 (VF2139)	-	2391189..2392862 (+)	1674	WP_011262586.1	ABC transporter substrate-binding protein	-
VF_RS11115 (VF2140)	-	2393011..2393997 (+)	987	WP_011262587.1	ABC transporter permease	-
VF_RS11120 (VF2141)	-	2394000..2395025 (+)	1026	WP_011262588.1	ABC transporter permease	-

Sequence

Protein

• Length: 1126 a.a.
• Molecular weight: 126822.09 Da
• Isoelectric Point: 5.7842

>NTDB_id=24260 VF_RS11105 WP_011262585.1 2387189..2390569(+) (chiS) [Aliivibrio fischeri ES114]
MDKKQHFKRLQNTLMIAFLVLSITPLSLIAIFFLHSHSQDLATQSTAHLVSLRDNKEQQITNYFKGRKSEVLGFARSELA
NASGGRFYGLVSAFPHLGTSIEDARKNAQLRYITGSGDKIRTSVLPESDSYIGSERYRLLHKRYHWAYLELLKRSDFSDV
LLVDINGNVVYSKAKEDNYGTNLLTGKYKDSTLADTYKKIRTLMKKPESEDNIPIIFSDFNTINNETVAWFAAPIVQQGY
LHSFALFKLPNTGLIELIGDNTDTSSIKTYFVGQDSYSRISNEDIEKNLSENMKLALSGESNVGSFIDKHGEKVLAAFTS
INVDGHLWGLSLELPEKEAFARIQQLEQIFVIAMIIAIVCVVIASHFLSNSITAPLLRLTWAAERVSAGDLDQEMISTDR
KDEIGRLAVSFARMQRSIREKIQLIKDQNEELEANLATIQLKNNELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYT
GANGPISASHRHQLEIIINSGQRLTSLVNDLLDYHKMRHGNLDINKHVTDLSSATSLVLELSQHLLGNKSIRIINQVDKS
LPVVFVDEQRLEQVLYNLIGNAIKYTSEGKIVISASVVDQFLRVQVVDTGHGIPADELEHIFEPLIQAGHDSNRYRQGSG
LGLSISRQLIELMGGSLYVSSQPMVGATFSFTLPLATKEQIQQHKLLAQEGITHYQTPEKLEYNLDEIDEELPENPEGPL
LLVADDEPVNLQVLTSFLKLEGYRVKVANDGPETLKVFEEEKPELLLLDVMMPGMSGYEVCQSLRETYSHSELPIIMLTA
LNQTQDRIRGFESGANDYLSKPFNKQELAARIKAHLKASKAELFLSENDRLQQEIRHREKVEASLLETQAHILEQLNHAQ
EAIICAKSDGKIKYVNNSAAKLFQRTEEQLSRYSIDELIAKRSLIESKQNHRGNIDVYIDGEITQINADLLHLPAESGLS
LILVVSHKHEANEQRIHDLESAVEALSAFAFEGDKQKLNSLSLVGGDIAQLATKANENKEDKGTIMRELIVDGMISGLSY
WEESTGQTKYTLAEESGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVISTLEYILEHCEQYNDQRDKLVRIKDKLQ
ILISNN

Nucleotide

• Length: 3381 bp

>NTDB_id=24260 VF_RS11105 WP_011262585.1 2387189..2390569(+) (chiS) [Aliivibrio fischeri ES114]
ATGGATAAAAAACAACACTTTAAACGTCTACAAAATACGTTGATGATTGCGTTTCTTGTTTTAAGCATAACGCCACTATC
ACTTATTGCAATTTTCTTTCTTCACTCTCATAGCCAAGATCTTGCAACGCAAAGTACCGCACATCTTGTGTCATTACGAG
ACAACAAAGAACAACAAATTACAAACTACTTTAAAGGCCGTAAATCCGAAGTATTAGGGTTTGCTCGCTCTGAACTAGCT
AATGCAAGTGGCGGTCGATTTTACGGTTTGGTTAGTGCCTTTCCACACTTAGGAACCTCCATAGAAGACGCTCGTAAAAA
CGCACAACTACGGTATATTACCGGTTCTGGTGATAAAATTAGAACCAGTGTTCTTCCTGAATCAGACTCTTATATTGGTA
GTGAACGCTACCGTCTTCTACATAAACGTTACCATTGGGCATATTTAGAACTCTTAAAACGTTCAGACTTTAGTGACGTT
CTATTAGTTGATATTAATGGCAACGTTGTGTATTCCAAAGCCAAAGAAGACAATTATGGTACGAATTTATTAACAGGTAA
GTACAAAGACAGTACGTTAGCGGATACATATAAAAAGATCCGAACATTAATGAAAAAGCCTGAGAGCGAAGATAATATTC
CTATCATTTTTTCTGATTTCAATACCATAAATAACGAAACGGTAGCATGGTTTGCAGCTCCAATAGTACAGCAAGGTTAT
TTACATAGCTTTGCTCTATTCAAATTACCAAATACAGGTCTAATTGAATTGATTGGAGATAATACTGATACAAGTTCCAT
CAAAACCTACTTTGTAGGCCAAGACTCTTACTCCCGTATCAGCAATGAAGACATTGAAAAAAACCTCTCTGAAAATATGA
AGTTGGCACTATCAGGTGAATCAAATGTCGGTAGCTTTATTGATAAGCACGGAGAAAAAGTGCTTGCTGCATTTACTTCT
ATTAATGTTGATGGGCATTTATGGGGACTATCACTTGAACTTCCAGAAAAAGAAGCTTTTGCTCGCATTCAACAACTTGA
GCAAATCTTTGTTATTGCAATGATAATAGCCATTGTCTGTGTTGTTATTGCTTCGCATTTCTTATCTAACTCAATCACAG
CACCACTTTTACGCTTAACATGGGCGGCAGAACGAGTGTCTGCTGGTGATCTTGATCAAGAGATGATCAGCACGGATAGA
AAAGATGAAATTGGTCGCTTAGCGGTTAGTTTTGCACGAATGCAACGCTCAATAAGAGAAAAAATTCAACTAATTAAAGA
CCAAAATGAAGAGCTTGAAGCTAACTTAGCCACCATTCAATTAAAGAACAATGAACTGGAAGCTGCTGATAAGTTAAAAG
ATGAATTTTTAGCAACCACATCGCATGAGTTAAGAACACCATTACATGGAATGGTTGGCATTGCAGAAGCCTTATACACT
GGAGCTAACGGTCCAATATCAGCATCTCATCGCCATCAATTAGAGATCATTATAAATAGCGGTCAACGCTTAACAAGCCT
GGTTAATGACCTACTTGATTATCATAAAATGCGTCATGGTAACCTTGATATAAATAAACATGTTACCGATTTATCCTCTG
CAACCAGTTTAGTTCTGGAGTTATCGCAACACCTTCTTGGAAACAAATCCATCCGTATTATTAACCAAGTAGATAAATCA
TTACCTGTTGTTTTTGTCGATGAACAACGCCTTGAACAGGTTCTTTATAATCTTATTGGCAATGCGATTAAATATACATC
AGAAGGTAAAATTGTTATCTCAGCAAGTGTTGTAGATCAATTCTTGCGAGTTCAGGTCGTAGACACTGGGCACGGAATTC
CGGCTGATGAATTAGAACATATTTTTGAACCATTAATTCAAGCTGGTCATGATTCAAACCGCTATCGTCAAGGCTCTGGT
CTTGGTCTATCAATCAGTCGACAATTAATTGAATTAATGGGCGGTTCTTTATATGTGAGTAGCCAACCAATGGTAGGAGC
GACATTTAGCTTTACCCTTCCTCTTGCAACTAAAGAACAAATTCAACAACACAAATTGCTTGCTCAAGAAGGTATTACTC
ACTATCAAACGCCTGAAAAACTTGAATATAATTTAGATGAGATTGATGAGGAATTACCAGAAAACCCTGAGGGCCCACTT
TTATTAGTTGCGGATGATGAACCCGTCAATCTACAAGTACTTACTAGTTTCTTAAAACTCGAAGGGTACCGAGTGAAAGT
GGCTAATGATGGACCTGAAACATTAAAAGTATTTGAAGAAGAAAAGCCTGAATTATTATTGCTTGATGTCATGATGCCAG
GAATGAGCGGCTATGAAGTATGCCAATCATTAAGAGAGACTTATAGCCACTCTGAACTACCTATTATTATGTTAACAGCC
TTAAATCAAACTCAAGATAGAATTCGAGGTTTTGAGTCAGGCGCTAACGACTATTTAAGTAAGCCTTTTAATAAACAAGA
ACTAGCAGCTCGAATAAAAGCGCACCTTAAAGCAAGTAAGGCTGAATTATTCTTAAGTGAAAATGACCGTCTACAGCAGG
AAATTCGCCATAGAGAAAAAGTAGAAGCCAGTTTACTTGAGACACAGGCTCATATATTAGAGCAACTTAATCATGCACAA
GAAGCCATTATATGCGCAAAAAGTGATGGAAAAATTAAGTATGTAAATAACTCTGCTGCAAAACTATTTCAAAGAACAGA
AGAACAACTTTCACGTTATTCTATTGATGAGCTAATAGCTAAACGTAGCCTTATTGAAAGTAAACAAAACCACCGTGGCA
ATATTGATGTTTATATTGATGGTGAAATAACACAAATAAACGCTGATTTATTACATCTTCCTGCAGAGTCCGGGCTATCC
CTTATTCTTGTAGTTAGCCATAAACACGAAGCAAACGAACAACGAATTCATGACTTAGAAAGTGCAGTAGAAGCACTATC
TGCATTTGCATTCGAAGGCGATAAACAAAAGCTAAACTCGCTATCACTAGTTGGTGGGGATATTGCTCAACTAGCCACTA
AAGCCAATGAAAATAAAGAAGACAAAGGCACTATCATGCGAGAACTCATTGTTGACGGCATGATCTCAGGCCTTTCTTAT
TGGGAAGAGTCTACAGGGCAAACCAAATACACTCTCGCAGAAGAGAGTGGGTTATGGCGAGTGTATTTAGATAGAAGCAC
ACTACAAACACGTACACTTGATAAATACTTACGAGTAGAAACTCTGCCAAAAACACCACGCTGGAGAACCGTAATTAGTA
CGTTAGAGTACATTTTAGAACATTGTGAGCAATACAATGACCAACGTGACAAACTGGTTAGAATTAAAGATAAACTACAA
ATACTCATATCCAACAACTAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (367-420)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (567-676)

• Response regulator receiver domain (Response_reg) (722-833)

• His Kinase A (phospho-acceptor) domain (HisKA) (453-520)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	63.886	100	0.639