Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CJZ71_RS01805 Genome accession   NZ_CP022891
Coordinates   308733..309353 (+) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis strain DKU_NT_03     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 303733..314353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ71_RS01765 (CJZ71_01765) ptsA 304865..305371 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  CJZ71_RS01770 (CJZ71_01770) ypqA 305509..305928 (+) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  CJZ71_RS01775 (CJZ71_01775) sppG 305949..306326 (-) 378 WP_041053169.1 YppG family protein -
  CJZ71_RS01780 (CJZ71_01780) yppF 306513..306701 (+) 189 WP_003230690.1 YppF family protein -
  CJZ71_RS01785 (CJZ71_01785) yppE 306740..307111 (-) 372 WP_003246080.1 YppE family protein -
  CJZ71_RS01790 (CJZ71_01790) yppD 307157..307402 (-) 246 WP_004398488.1 YppD family protein -
  CJZ71_RS01795 (CJZ71_01795) sspM 307601..307705 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  CJZ71_RS01800 (CJZ71_01800) yppC 307730..308692 (-) 963 WP_033881326.1 DUF2515 domain-containing protein -
  CJZ71_RS01805 (CJZ71_01805) recU 308733..309353 (+) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  CJZ71_RS01810 (CJZ71_01810) ponA 309375..312119 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  CJZ71_RS01815 (CJZ71_01815) ypoC 312195..312689 (-) 495 WP_009967579.1 YpoC family protein -
  CJZ71_RS01820 (CJZ71_01820) nth 312686..313345 (-) 660 WP_009967580.1 endonuclease III -
  CJZ71_RS01825 (CJZ71_01825) dnaD 313364..314062 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=242599 CJZ71_RS01805 WP_014480105.1 308733..309353(+) (recU) [Bacillus subtilis strain DKU_NT_03]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=242599 CJZ71_RS01805 WP_014480105.1 308733..309353(+) (recU) [Bacillus subtilis strain DKU_NT_03]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment