Detailed information
Bioinformatically predicted
Overview
| Name | recF | Type | Machinery gene |
| Locus tag | CJZ70_RS20230 | Genome accession | NZ_CP022890 |
| Coordinates | 3860777..3861889 (-) | Length | 370 a.a. |
| NCBI ID | WP_014478578.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain DKU_NT_02 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3836887..3881151 | 3860777..3861889 | within | 0 |
Gene organization within MGE regions
Location: 3836887..3881151
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CJZ70_RS20120 (CJZ70_20120) | dnaX | 3836887..3838578 (-) | 1692 | WP_069837178.1 | DNA polymerase III subunit gamma/tau | - |
| CJZ70_RS20130 (CJZ70_20130) | tadA | 3839055..3839540 (-) | 486 | WP_003226784.1 | tRNA adenosine(34) deaminase TadA | - |
| CJZ70_RS20135 (CJZ70_20135) | yaaI | 3839626..3840171 (+) | 546 | WP_014478587.1 | isochorismatase family cysteine hydrolase | - |
| CJZ70_RS20140 (CJZ70_20140) | sleL | 3840241..3841524 (+) | 1284 | WP_095010796.1 | glycoside hydrolase family 18 protein | - |
| CJZ70_RS20145 (CJZ70_20145) | dgk | 3841623..3842246 (+) | 624 | WP_003226790.1 | deoxyguanosine kinase | - |
| CJZ70_RS20150 (CJZ70_20150) | dck | 3842243..3842896 (+) | 654 | WP_014478585.1 | deoxyadenosine/deoxycytidine kinase | - |
| CJZ70_RS20160 (CJZ70_20160) | serS | 3843235..3844512 (-) | 1278 | WP_021479916.1 | serine--tRNA ligase | - |
| CJZ70_RS20165 (CJZ70_20165) | pdxT | 3844834..3845424 (-) | 591 | WP_064671159.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| CJZ70_RS20170 (CJZ70_20170) | pdxS | 3845446..3846330 (-) | 885 | WP_003247145.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| CJZ70_RS20175 (CJZ70_20175) | dacA | 3846527..3847858 (-) | 1332 | WP_015482683.1 | D-alanyl-D-alanine carboxypeptidase | - |
| CJZ70_RS20180 (CJZ70_20180) | guaB | 3848011..3849477 (-) | 1467 | WP_003226803.1 | IMP dehydrogenase | - |
| CJZ70_RS20185 (CJZ70_20185) | yaaC | 3849598..3850545 (+) | 948 | WP_095010797.1 | YaaC family protein | - |
| CJZ70_RS20215 (CJZ70_20215) | gyrA | 3855867..3858332 (-) | 2466 | WP_003244540.1 | DNA topoisomerase (ATP-hydrolyzing) subunit A | - |
| CJZ70_RS20220 (CJZ70_20220) | gyrB | 3858543..3860459 (-) | 1917 | WP_003226808.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| CJZ70_RS20225 (CJZ70_20225) | remB | 3860514..3860759 (-) | 246 | WP_003219266.1 | extracellular matrix regulator RemB | - |
| CJZ70_RS20230 (CJZ70_20230) | recF | 3860777..3861889 (-) | 1113 | WP_014478578.1 | DNA replication/repair protein RecF | Machinery gene |
| CJZ70_RS20235 (CJZ70_20235) | rlbA | 3861905..3862120 (-) | 216 | WP_003226810.1 | ribosome maturation protein RlbA | - |
| CJZ70_RS20240 (CJZ70_20240) | dnaN | 3862251..3863387 (-) | 1137 | WP_003226811.1 | DNA polymerase III subunit beta | - |
| CJZ70_RS20245 (CJZ70_20245) | dnaA | 3863576..3864916 (-) | 1341 | WP_003242674.1 | chromosomal replication initiator protein DnaA | - |
| CJZ70_RS20250 (CJZ70_20250) | rpmH | 3865543..3865677 (+) | 135 | WP_003178075.1 | 50S ribosomal protein L34 | - |
| CJZ70_RS20255 (CJZ70_20255) | rnpA | 3865829..3866179 (+) | 351 | WP_014481515.1 | ribonuclease P protein component | - |
| CJZ70_RS20260 (CJZ70_20260) | spoIIIJ | 3866323..3867108 (+) | 786 | WP_010886648.1 | YidC family membrane integrase SpoIIIJ | - |
| CJZ70_RS20265 (CJZ70_20265) | jag | 3867105..3867731 (+) | 627 | WP_014481513.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| CJZ70_RS20270 (CJZ70_20270) | mnmE | 3868042..3869421 (+) | 1380 | WP_014478576.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| CJZ70_RS20275 (CJZ70_20275) | mnmG | 3869442..3871328 (+) | 1887 | WP_003226825.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG | - |
| CJZ70_RS20280 (CJZ70_20280) | rsmG | 3871342..3872061 (+) | 720 | WP_014481512.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| CJZ70_RS20285 (CJZ70_20285) | noc | 3872183..3873034 (+) | 852 | WP_003226829.1 | nucleoid occlusion protein | - |
| CJZ70_RS20290 (CJZ70_20290) | yyaB | 3873085..3873525 (-) | 441 | WP_014481510.1 | PH domain-containing protein | - |
| CJZ70_RS20295 (CJZ70_20295) | soj | 3873773..3874534 (+) | 762 | WP_003219244.1 | sporulation initiation inhibitor protein Soj | - |
| CJZ70_RS20300 (CJZ70_20300) | spo0J | 3874527..3875375 (+) | 849 | WP_003226832.1 | stage 0 sporulation protein Spo0J | - |
| CJZ70_RS20310 (CJZ70_20310) | yyaC | 3876704..3877321 (-) | 618 | WP_095010798.1 | spore protease YyaC | - |
| CJZ70_RS20315 (CJZ70_20315) | - | 3877781..3878797 (+) | 1017 | WP_010886647.1 | membrane protein | - |
| CJZ70_RS20320 (CJZ70_20320) | yyzM | 3878891..3879097 (+) | 207 | WP_003226838.1 | DUF951 family protein | - |
| CJZ70_RS20325 (CJZ70_20325) | yyaE | 3879148..3881151 (+) | 2004 | WP_095010799.1 | molybdopterin-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 42304.34 Da Isoelectric Point: 7.3660
>NTDB_id=242593 CJZ70_RS20230 WP_014478578.1 3860777..3861889(-) (recF) [Bacillus subtilis strain DKU_NT_02]
MYIQNLELSSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK
MYIQNLELSSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK
Nucleotide
Download Length: 1113 bp
>NTDB_id=242593 CJZ70_RS20230 WP_014478578.1 3860777..3861889(-) (recF) [Bacillus subtilis strain DKU_NT_02]
TTGTATATCCAGAACTTAGAACTTTCATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATTGGACAGGTTTCTCCCGTCTATCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTATAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTTACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGATTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA
TTGTATATCCAGAACTTAGAACTTTCATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATTGGACAGGTTTCTCCCGTCTATCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTATAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTTACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGATTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recF | Bacillus subtilis subsp. subtilis str. 168 |
99.459 |
100 |
0.995 |