Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   CJZ70_RS14550 Genome accession   NZ_CP022890
Coordinates   2748991..2749569 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain DKU_NT_02     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2743991..2754569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS14515 (CJZ70_14515) lepB 2743996..2744502 (-) 507 WP_003233128.1 signal peptidase I -
  CJZ70_RS14520 (CJZ70_14520) yhjE 2744504..2745127 (-) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  CJZ70_RS14525 (CJZ70_14525) - 2745279..2745650 (+) 372 WP_014476361.1 hypothetical protein -
  CJZ70_RS14530 (CJZ70_14530) yhjC 2745849..2746049 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  CJZ70_RS14535 (CJZ70_14535) yhjB 2746046..2747515 (+) 1470 WP_014479374.1 sodium:solute symporter -
  CJZ70_RS14540 (CJZ70_14540) yhjA 2747559..2747828 (-) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  CJZ70_RS14545 (CJZ70_14545) yhxD 2748045..2748944 (+) 900 WP_014479372.1 SDR family oxidoreductase -
  CJZ70_RS14550 (CJZ70_14550) comK 2748991..2749569 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  CJZ70_RS14555 (CJZ70_14555) yhzC 2749861..2750094 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  CJZ70_RS14560 (CJZ70_14560) yhxC 2750122..2750979 (-) 858 WP_014479371.1 SDR family oxidoreductase -
  CJZ70_RS21590 (CJZ70_14565) - 2751083..2752084 (+) 1002 Protein_2896 FAD-dependent oxidoreductase -
  CJZ70_RS21595 - 2752091..2752612 (+) 522 WP_014479368.1 (2Fe-2S)-binding protein -
  CJZ70_RS14570 (CJZ70_14570) hemAT 2752751..2754049 (+) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=242577 CJZ70_RS14550 WP_003245329.1 2748991..2749569(-) (comK) [Bacillus subtilis strain DKU_NT_02]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=242577 CJZ70_RS14550 WP_003245329.1 2748991..2749569(-) (comK) [Bacillus subtilis strain DKU_NT_02]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment