Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   CJZ70_RS12510 Genome accession   NZ_CP022890
Coordinates   2372631..2373095 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain DKU_NT_02     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2367631..2378095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS12490 (CJZ70_12490) fadH 2368819..2369583 (-) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -
  CJZ70_RS12495 (CJZ70_12495) ppeE 2369726..2370586 (+) 861 WP_003232400.1 metallophosphoesterase -
  CJZ70_RS12500 (CJZ70_12500) ltdD 2370643..2371137 (+) 495 WP_072174092.1 L,D-transpeptidase family protein -
  CJZ70_RS12505 (CJZ70_12505) ykuC 2371213..2372505 (+) 1293 WP_014479656.1 MFS transporter -
  CJZ70_RS12510 (CJZ70_12510) kre 2372631..2373095 (+) 465 WP_003232406.1 YkyB family protein Regulator
  CJZ70_RS12515 (CJZ70_12515) cheV 2373139..2374050 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  CJZ70_RS12520 (CJZ70_12520) - 2374254..2374415 (+) 162 WP_003245246.1 hypothetical protein -
  CJZ70_RS12525 (CJZ70_12525) dapX 2374617..2375798 (+) 1182 WP_014479654.1 aminotransferase A -
  CJZ70_RS12530 (CJZ70_12530) kinA 2375795..2377627 (-) 1833 WP_069964148.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=242565 CJZ70_RS12510 WP_003232406.1 2372631..2373095(+) (kre) [Bacillus subtilis strain DKU_NT_02]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=242565 CJZ70_RS12510 WP_003232406.1 2372631..2373095(+) (kre) [Bacillus subtilis strain DKU_NT_02]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment