Detailed information NTG0242560

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C9E65_RS05620
• Genome accession: NZ_CP028614
• Coordinates: 1131307..1132299 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 141
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1126307..1137299

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C9E65_RS05590 (C9E65_05910)	ispD	1126368..1127078 (+)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C9E65_RS05595 (C9E65_05915)	ispF	1127078..1127557 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C9E65_RS05600 (C9E65_05920)	truD	1127554..1128603 (+)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
C9E65_RS05605 (C9E65_05925)	surE	1128584..1129345 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C9E65_RS05610 (C9E65_05930)	pcm	1129339..1129965 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C9E65_RS05615 (C9E65_05935)	nlpD	1130150..1131244 (+)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
C9E65_RS05620 (C9E65_05940)	rpoS	1131307..1132299 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C9E65_RS05625 (C9E65_05945)	-	1132419..1132826 (-)	408	WP_000175365.1	MarR family transcriptional regulator	-
C9E65_RS05630 (C9E65_05950)	-	1132973..1133566 (+)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C9E65_RS05635 (C9E65_05955)	-	1133566..1134993 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C9E65_RS05640 (C9E65_05960)	-	1135004..1135240 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C9E65_RS05645 (C9E65_05965)	pphB	1135281..1135937 (-)	657	WP_001141350.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=242560 C9E65_RS05620 WP_000081550.1 1131307..1132299(+) (rpoS) [Escherichia coli strain 141]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=242560 C9E65_RS05620 WP_000081550.1 1131307..1132299(+) (rpoS) [Escherichia coli strain 141]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715