Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CJZ70_RS09210 Genome accession   NZ_CP022890
Coordinates   1757223..1757843 (-) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis strain DKU_NT_02     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1752223..1762843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS09190 (CJZ70_09190) dnaD 1752514..1753212 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  CJZ70_RS09195 (CJZ70_09195) nth 1753231..1753890 (+) 660 WP_009967580.1 endonuclease III -
  CJZ70_RS09200 (CJZ70_09200) ypoC 1753887..1754381 (+) 495 WP_009967579.1 YpoC family protein -
  CJZ70_RS09205 (CJZ70_09205) ponA 1754457..1757201 (-) 2745 WP_046160510.1 PBP1A family penicillin-binding protein -
  CJZ70_RS09210 (CJZ70_09210) recU 1757223..1757843 (-) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  CJZ70_RS09215 (CJZ70_09215) yppC 1757884..1758846 (+) 963 WP_033881326.1 DUF2515 domain-containing protein -
  CJZ70_RS09220 (CJZ70_09220) sspM 1758871..1758975 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  CJZ70_RS09225 (CJZ70_09225) yppD 1759174..1759419 (+) 246 WP_021481526.1 DUF5446 family protein -
  CJZ70_RS09230 (CJZ70_09230) yppE 1759465..1759836 (+) 372 WP_021481525.1 YppE family protein -
  CJZ70_RS09235 (CJZ70_09235) yppF 1759875..1760063 (-) 189 WP_003230690.1 YppF family protein -
  CJZ70_RS09240 (CJZ70_09240) sppG 1760251..1760628 (+) 378 WP_015251832.1 YppG family protein -
  CJZ70_RS09245 (CJZ70_09245) ypqA 1760649..1761068 (-) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  CJZ70_RS09250 (CJZ70_09250) ptsA 1761206..1761712 (+) 507 WP_029726788.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=242558 CJZ70_RS09210 WP_014480105.1 1757223..1757843(-) (recU) [Bacillus subtilis strain DKU_NT_02]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=242558 CJZ70_RS09210 WP_014480105.1 1757223..1757843(-) (recU) [Bacillus subtilis strain DKU_NT_02]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment