Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CJZ70_RS07865 Genome accession   NZ_CP022890
Coordinates   1522457..1522888 (+) Length   143 a.a.
NCBI ID   WP_014480256.1    Uniprot ID   A0A0D1KRY1
Organism   Bacillus subtilis strain DKU_NT_02     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1517457..1527888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS07840 (CJZ70_07840) corA 1518699..1519652 (+) 954 WP_014480260.1 magnesium transporter CorA -
  CJZ70_RS07845 (CJZ70_07845) - 1519654..1519851 (+) 198 WP_014480259.1 CBS domain-containing protein -
  CJZ70_RS07850 (CJZ70_07850) comGA 1520063..1521133 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  CJZ70_RS07855 (CJZ70_07855) comGB 1521120..1522157 (+) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  CJZ70_RS07860 (CJZ70_07860) comGC 1522171..1522467 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  CJZ70_RS07865 (CJZ70_07865) comGD 1522457..1522888 (+) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  CJZ70_RS07870 (CJZ70_07870) comGE 1522872..1523219 (+) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  CJZ70_RS07875 (CJZ70_07875) comGF 1523245..1523628 (+) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  CJZ70_RS07880 (CJZ70_07880) comGG 1523629..1524003 (+) 375 WP_029317914.1 ComG operon protein ComGG Machinery gene
  CJZ70_RS07885 (CJZ70_07885) spoIITA 1524074..1524253 (+) 180 WP_014480252.1 YqzE family protein -
  CJZ70_RS07890 (CJZ70_07890) yqzG 1524295..1524621 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  CJZ70_RS07895 (CJZ70_07895) tapA 1524893..1525654 (+) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  CJZ70_RS07900 (CJZ70_07900) sipW 1525638..1526210 (+) 573 WP_003230181.1 signal peptidase I SipW -
  CJZ70_RS07905 (CJZ70_07905) tasA 1526274..1527059 (+) 786 WP_014480250.1 biofilm matrix protein TasA -
  CJZ70_RS07910 (CJZ70_07910) sinR 1527152..1527487 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  CJZ70_RS07915 (CJZ70_07915) sinI 1527521..1527694 (-) 174 WP_003230187.1 anti-repressor SinI Regulator

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16091.75 Da        Isoelectric Point: 10.1947

>NTDB_id=242550 CJZ70_RS07865 WP_014480256.1 1522457..1522888(+) (comGD) [Bacillus subtilis strain DKU_NT_02]
MNIKLNEEKGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=242550 CJZ70_RS07865 WP_014480256.1 1522457..1522888(+) (comGD) [Bacillus subtilis strain DKU_NT_02]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GATTGCCGTCTTCACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KRY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

98.601

100

0.986

Multiple sequence alignment