Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CJZ70_RS04500 Genome accession   NZ_CP022890
Coordinates   876536..877180 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_NT_02     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 871536..882180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS04475 (CJZ70_04475) - 871887..872255 (-) 369 WP_017695529.1 hypothetical protein -
  CJZ70_RS21085 - 872370..872495 (-) 126 WP_120028613.1 hypothetical protein -
  CJZ70_RS04480 (CJZ70_04480) degQ 872717..872857 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  CJZ70_RS04485 (CJZ70_04485) - 873041..873904 (+) 864 WP_095010814.1 polyprenyl synthetase family protein -
  CJZ70_RS04490 (CJZ70_04490) comX 873906..874127 (+) 222 WP_014480704.1 competence pheromone ComX -
  CJZ70_RS04495 (CJZ70_04495) comP 874143..876455 (+) 2313 WP_014480703.1 sensor histidine kinase Regulator
  CJZ70_RS04500 (CJZ70_04500) comA 876536..877180 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  CJZ70_RS04505 (CJZ70_04505) yuxO 877199..877579 (+) 381 WP_069837723.1 hotdog fold thioesterase -
  CJZ70_RS04510 (CJZ70_04510) mnhG 877618..877992 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  CJZ70_RS04515 (CJZ70_04515) mrpF 877976..878260 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  CJZ70_RS04520 (CJZ70_04520) mrpE 878260..878736 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  CJZ70_RS04525 (CJZ70_04525) mrpD 878742..880223 (-) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  CJZ70_RS04530 (CJZ70_04530) mrpC 880216..880557 (-) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  CJZ70_RS04535 (CJZ70_04535) mrpB 880557..880988 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=242533 CJZ70_RS04500 WP_003220716.1 876536..877180(+) (comA) [Bacillus subtilis strain DKU_NT_02]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=242533 CJZ70_RS04500 WP_003220716.1 876536..877180(+) (comA) [Bacillus subtilis strain DKU_NT_02]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGACTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment