Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CJZ70_RS02255 Genome accession   NZ_CP022890
Coordinates   442859..443548 (+) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_NT_02     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 437859..448548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS02230 (CJZ70_02230) - 438184..438639 (-) 456 WP_095010556.1 hypothetical protein -
  CJZ70_RS02235 (CJZ70_02235) - 438695..439150 (-) 456 WP_046160907.1 hypothetical protein -
  CJZ70_RS02240 (CJZ70_02240) - 439757..440749 (-) 993 WP_014481056.1 LCP family protein -
  CJZ70_RS02245 (CJZ70_02245) - 440749..441402 (-) 654 WP_014481055.1 YigZ family protein -
  CJZ70_RS02250 (CJZ70_02250) degS 441619..442776 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  CJZ70_RS02255 (CJZ70_02255) degU 442859..443548 (+) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  CJZ70_RS02260 (CJZ70_02260) fakBA 443646..444491 (+) 846 WP_014481053.1 DegV family protein -
  CJZ70_RS02265 (CJZ70_02265) comFA 444598..445989 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  CJZ70_RS02270 (CJZ70_02270) comFB 446049..446345 (+) 297 WP_003227989.1 late competence protein ComFB -
  CJZ70_RS02275 (CJZ70_02275) comFC 446309..447031 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  CJZ70_RS02280 (CJZ70_02280) yvyF 447104..447523 (+) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  CJZ70_RS02285 (CJZ70_02285) flgM 447604..447870 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  CJZ70_RS02290 (CJZ70_02290) flgN 447886..448368 (+) 483 WP_014481048.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=242525 CJZ70_RS02255 WP_014481054.1 442859..443548(+) (degU) [Bacillus subtilis strain DKU_NT_02]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=242525 CJZ70_RS02255 WP_014481054.1 442859..443548(+) (degU) [Bacillus subtilis strain DKU_NT_02]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment