Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ssp1_RS10785 Genome accession   NZ_CP022881
Coordinates   2214163..2215527 (-) Length   454 a.a.
NCBI ID   WP_002451201.1    Uniprot ID   A0A2T4Q0D3
Organism   Staphylococcus sp. M0911     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2209163..2220527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ssp1_RS10770 (Ssp1_21720) cysE 2210302..2210931 (-) 630 WP_171970107.1 serine O-acetyltransferase -
  ssp1_RS10775 (Ssp1_21730) gltX 2211323..2212777 (-) 1455 WP_002451203.1 glutamate--tRNA ligase -
  ssp1_RS10780 (Ssp1_21740) - 2213063..2214136 (-) 1074 WP_118828222.1 PIN/TRAM domain-containing protein -
  ssp1_RS10785 (Ssp1_21750) radA 2214163..2215527 (-) 1365 WP_002451201.1 DNA repair protein RadA Machinery gene
  ssp1_RS10790 (Ssp1_21760) - 2215873..2218326 (-) 2454 WP_049423903.1 ATP-dependent Clp protease ATP-binding subunit -
  ssp1_RS10795 (Ssp1_21770) - 2218342..2219346 (-) 1005 WP_002451199.1 protein arginine kinase -
  ssp1_RS10800 (Ssp1_21780) - 2219339..2219896 (-) 558 WP_049423900.1 UvrB/UvrC motif-containing protein -
  ssp1_RS10805 (Ssp1_21790) - 2219917..2220378 (-) 462 WP_002451197.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49763.24 Da        Isoelectric Point: 6.8987

>NTDB_id=242486 ssp1_RS10785 WP_002451201.1 2214163..2215527(-) (radA) [Staphylococcus sp. M0911]
MAKKKIIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKSKEAAGKVQTLDSIKNESTPRILTESKEFNRV
LGGGIVNGSLVLIGGDPGIGKSTLLLQICASLSQSKNVLYITGEESINQTKLRADRLEEDSSQLQVLAETDLEVIYQTVK
DINPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDKAVDGLDCFIGEVGLTGEVR
RVARIEQRVQEAAKLGFKRVIIPQTNIGGWTFPEGIKVVGVSSVHEALKYAFNS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=242486 ssp1_RS10785 WP_002451201.1 2214163..2215527(-) (radA) [Staphylococcus sp. M0911]
TTGGCCAAGAAAAAGATAATATTCGAATGTATGGCATGTGGCTATCAATCTCCAAAATGGATGGGAAAGTGTCCTAATTG
TGGTGCATGGAACCAGATGGAAGAAATAGTAGAAAAAGCAGCCAACCCTAAACATGGTGTTAAATCTAAAGAAGCAGCAG
GAAAAGTACAAACATTAGATAGTATCAAAAATGAATCAACACCACGTATTCTTACAGAATCTAAAGAATTTAACCGTGTA
CTTGGTGGAGGGATTGTCAATGGATCATTAGTGTTAATAGGCGGAGATCCAGGAATTGGGAAATCCACGTTACTTCTACA
AATTTGTGCCTCACTCTCACAATCTAAAAATGTTTTATATATAACAGGTGAGGAATCAATTAACCAAACCAAATTACGTG
CAGATCGTTTAGAAGAAGATTCAAGTCAATTACAAGTATTAGCTGAAACAGATTTAGAAGTCATCTATCAAACAGTTAAA
GACATTAATCCGGACTTACTAGTCGTCGACTCTATCCAAACGATATACCATCCAGAAATCAGTTCTGCACCAGGGTCTGT
GTCACAAGTTAGAGAAAGTACGCAAAGTTTAATGAATATAGCTAAACAAATGAATATAGCTACATTTATTGTTGGACATG
TTACAAAAGAAGGTCAAATTGCTGGACCAAGATTACTTGAACATATGGTGGATACTGTATTGTACTTCGAAGGTGATGAA
CATCATGCTTATCGAATACTAAGAGCAGTTAAAAACCGTTTTGGTTCGACAAATGAGATGGGAATATTTGAAATGAAACA
GAGTGGTCTTAAGGGTGTTCTGAACCCTTCAGAGATGTTTTTAGAAGAACGTTCAACTAACGTGCCAGGTTCAACAATTG
TTTCAACTATGGAAGGTACAAGACCACTACTTATTGAAGTACAGGCGCTTGTAACACCGACTACATTTAATAATCCACGT
CGTATGGCTACTGGTATCGATCACAATCGTTTAAGCCTATTAATGGCAGTTTTAGAGAAAAAAGAAAATTATCTACTACA
ACAACAAGATGCTTATATTAAGGTTGCTGGTGGCGTAAAATTAACTGAACCTGCAGTTGATTTAAGTATCATCGTCGCTA
CAGCTTCAAGCTTTAAAGATAAAGCTGTAGACGGCTTAGACTGCTTTATTGGTGAGGTAGGTCTAACAGGAGAAGTAAGG
CGGGTTGCTAGAATAGAACAACGTGTGCAAGAAGCGGCTAAGTTAGGGTTTAAGAGAGTTATTATTCCACAAACTAATAT
TGGTGGTTGGACTTTCCCTGAAGGTATTAAAGTAGTAGGCGTTTCATCAGTACACGAAGCATTAAAATACGCATTTAATT
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-218)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4Q0D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.886

100

0.672
  radA Streptococcus pneumoniae Rx1

60.398

99.559

0.601
  radA Streptococcus pneumoniae D39

60.398

99.559

0.601
  radA Streptococcus pneumoniae R6

60.398

99.559

0.601
  radA Streptococcus pneumoniae TIGR4

60.398

99.559

0.601
  radA Streptococcus mitis NCTC 12261

60.398

99.559

0.601
  radA Streptococcus mitis SK321

60.398

99.559

0.601

Multiple sequence alignment