Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ssp1_RS04285 Genome accession   NZ_CP022881
Coordinates   884398..885114 (-) Length   238 a.a.
NCBI ID   WP_002466277.1    Uniprot ID   -
Organism   Staphylococcus sp. M0911     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 879398..890114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ssp1_RS04265 (Ssp1_08630) - 880286..880510 (+) 225 WP_002452012.1 sulfurtransferase TusA family protein -
  ssp1_RS04270 (Ssp1_08650) - 880650..881600 (+) 951 WP_075777908.1 LacI family DNA-binding transcriptional regulator -
  ssp1_RS04275 (Ssp1_08660) - 881902..883386 (+) 1485 WP_118828134.1 sucrose-6-phosphate hydrolase -
  ssp1_RS04280 (Ssp1_08670) - 883383..884339 (+) 957 WP_002452009.1 carbohydrate kinase -
  ssp1_RS04285 (Ssp1_08680) agrA 884398..885114 (-) 717 WP_002466277.1 LytTR family DNA-binding domain-containing protein Regulator
  ssp1_RS04290 (Ssp1_08690) - 885127..886416 (-) 1290 WP_075778770.1 GHKL domain-containing protein -
  ssp1_RS04295 (Ssp1_08700) - 886446..886586 (-) 141 WP_002466272.1 cyclic lactone autoinducer peptide -
  ssp1_RS04300 (Ssp1_08710) - 886591..887154 (-) 564 WP_002451572.1 accessory gene regulator AgrB -
  ssp1_RS04305 - 887471..887548 (+) 78 WP_015364840.1 delta-lysin family phenol-soluble modulin -
  ssp1_RS04310 (Ssp1_08720) - 887615..887692 (+) 78 WP_015364841.1 delta-lysin family phenol-soluble modulin -
  ssp1_RS04315 (Ssp1_08730) - 888106..888891 (-) 786 WP_075778768.1 carbon-nitrogen family hydrolase -
  ssp1_RS04320 (Ssp1_08740) - 889008..889634 (-) 627 WP_002451574.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27897.92 Da        Isoelectric Point: 5.9175

>NTDB_id=242465 ssp1_RS04285 WP_002466277.1 884398..885114(-) (agrA) [Staphylococcus sp. M0911]
MKIFICEDDPKQRENMASIIKNYIMIEEKPMELALATDDPYEVLEQSKNMNDIGCYFLDIQLEADINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVINRRNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=242465 ssp1_RS04285 WP_002466277.1 884398..885114(-) (agrA) [Staphylococcus sp. M0911]
ATGAAAATATTCATTTGCGAAGATGATCCAAAACAACGAGAAAATATGGCTTCCATTATTAAAAATTACATTATGATTGA
AGAGAAGCCTATGGAGCTTGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCCAAAAATATGAATGACATCG
GTTGTTATTTCTTAGATATACAACTTGAAGCAGATATAAATGGTATTAAATTAGGTAGTGAAATTCGAAAACATGATCCT
GTAGGTAATATCATTTTTGTAACAAGCCATAGTGAATTAACGTATCTCACTTTCGTTTATAAAGTCGCTGCAATGGATTT
TATATTCAAAGATGATCCTGCAGAACTGAAAACACGTATTATCGATTGTTTAGAAACAGCTCACACAAGACTCAAATTAT
TATCCAAAGAAAGTAATGTAGAAACAATTGAGTTGAAACGTGGTAGTAATTCAGTTTATGTACAATATGACGATATCATG
TTTTTTGAATCATCTAGTAAATCACATCGTTTAATTGCACATTTAGATAATAGACAAATCGAATTTTATGGTAACCTTAA
AGAATTAAGTCAATTAGATGACCGTTTCTTTAGATGTCATAATAGCTTTGTGATTAATCGGAGAAATATTGAATCCATTG
ATTCTAAAGAGCGTATTGTCTATTTTAAAAATAAAGAACACTGTTATGCATCTGTTCGTAATGTCAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

93.697

100

0.937

Multiple sequence alignment