Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   STU_RS09690 Genome accession   NC_006448
Coordinates   30585..31358 (+) Length   257 a.a.
NCBI ID   WP_002946256.1    Uniprot ID   Q5M6K1
Organism   Streptococcus thermophilus LMG 18311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25585..36358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STU_RS09665 (stu0022) - 25711..27135 (+) 1425 WP_011225253.1 PcsB-like coiled-coil domain-containing protein -
  STU_RS09670 (stu0023) - 27349..28314 (+) 966 WP_011680585.1 ribose-phosphate diphosphokinase -
  STU_RS18995 - 28356..29211 (-) 856 Protein_19 transposase -
  STU_RS09685 (stu0026) - 29423..30598 (+) 1176 WP_011680586.1 pyridoxal phosphate-dependent aminotransferase -
  STU_RS09690 (stu0027) recO 30585..31358 (+) 774 WP_002946256.1 DNA repair protein RecO Machinery gene
  STU_RS09695 (stu0028) plsX 31574..32578 (+) 1005 WP_011225258.1 phosphate acyltransferase PlsX -
  STU_RS09700 (stu0029) - 32578..32823 (+) 246 WP_011225259.1 phosphopantetheine-binding protein -
  STU_RS09705 (stu0030) purC 33109..33816 (+) 708 WP_011225260.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29830.05 Da        Isoelectric Point: 5.0766

>NTDB_id=24245 STU_RS09690 WP_002946256.1 30585..31358(+) (recO) [Streptococcus thermophilus LMG 18311]
MQKLESRGFILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDNAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=24245 STU_RS09690 WP_002946256.1 30585..31358(+) (recO) [Streptococcus thermophilus LMG 18311]
ATGCAGAAGCTTGAGAGTAGGGGGTTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAATGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607

Multiple sequence alignment