Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CJO35_RS12905 Genome accession   NZ_CP022874
Coordinates   2475549..2476349 (-) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus sp. 1s-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2470549..2481349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJO35_RS12880 (CJO35_12885) - 2471356..2471931 (-) 576 WP_202604333.1 N-acetylmuramoyl-L-alanine amidase -
  CJO35_RS12885 (CJO35_12890) - 2472012..2472332 (-) 321 WP_003183355.1 hypothetical protein -
  CJO35_RS12890 (CJO35_12895) - 2472606..2474036 (-) 1431 WP_016886315.1 IS1182 family transposase -
  CJO35_RS12895 (CJO35_12900) - 2474367..2474750 (-) 384 WP_003183357.1 serine acetyltransferase -
  CJO35_RS12900 (CJO35_12905) - 2474880..2475176 (-) 297 WP_003183359.1 antimicrobial peptide LCI -
  CJO35_RS12905 (CJO35_12910) spo0A 2475549..2476349 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  CJO35_RS12910 (CJO35_12915) spoIVB 2476639..2477922 (-) 1284 WP_011198109.1 SpoIVB peptidase -
  CJO35_RS12915 (CJO35_12920) recN 2478105..2479835 (-) 1731 WP_003183366.1 DNA repair protein RecN Machinery gene
  CJO35_RS12920 (CJO35_12925) argR 2479867..2480316 (-) 450 WP_003183369.1 transcriptional regulator ArgR -
  CJO35_RS12925 (CJO35_12930) - 2480482..2481327 (-) 846 WP_003183371.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=242403 CJO35_RS12905 WP_003183361.1 2475549..2476349(-) (spo0A) [Bacillus sp. 1s-1]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=242403 CJO35_RS12905 WP_003183361.1 2475549..2476349(-) (spo0A) [Bacillus sp. 1s-1]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAGAG
CGACATGGAAGTGCTTGGTGTCGCATACAACGGACAGGAATGCCTTTCTTTGTTTAAAGACAAGGAGCCCGACGTGCTTG
TGCTGGATATAATCATGCCTCATCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGCCAGGAAGACGTGACCAAAAAAGCTGTAGATTTAGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAATTTAGTCGGACATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCCTCTCAAAGCAGTGTGCTTCGGCCGCAGCCTGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTACCTGCTCATATTAAAGGCTATTTGTACTTAAGAGAAGCCATCTCCATGGTATATAACGACATCGA
ACTGCTCGGCAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGCGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCAAAGCCGACCAATAGTGAGTTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925

Multiple sequence alignment