Detailed information NTG0242402

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C9E67_RS06000
• Genome accession: NZ_CP028607
• Coordinates: 1182670..1183662 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 143
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1177670..1188662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C9E67_RS05970 (C9E67_06295)	ispD	1177731..1178441 (+)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C9E67_RS05975 (C9E67_06300)	ispF	1178441..1178920 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C9E67_RS05980 (C9E67_06305)	truD	1178917..1179966 (+)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
C9E67_RS05985 (C9E67_06310)	surE	1179947..1180708 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C9E67_RS05990 (C9E67_06315)	pcm	1180702..1181328 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C9E67_RS05995 (C9E67_06320)	nlpD	1181513..1182607 (+)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
C9E67_RS06000 (C9E67_06325)	rpoS	1182670..1183662 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C9E67_RS06005 (C9E67_06330)	-	1183782..1184189 (-)	408	WP_000175365.1	MarR family transcriptional regulator	-
C9E67_RS06010 (C9E67_06335)	-	1184336..1184929 (+)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C9E67_RS06015 (C9E67_06340)	-	1184929..1186356 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C9E67_RS06020 (C9E67_06345)	-	1186367..1186603 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C9E67_RS06025 (C9E67_06350)	pphB	1186644..1187300 (-)	657	WP_001141350.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=242402 C9E67_RS06000 WP_000081550.1 1182670..1183662(+) (rpoS) [Escherichia coli strain 143]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=242402 C9E67_RS06000 WP_000081550.1 1182670..1183662(+) (rpoS) [Escherichia coli strain 143]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACAGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715