Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B8P98_RS18350 Genome accession   NZ_CP022823
Coordinates   3639742..3640338 (-) Length   198 a.a.
NCBI ID   WP_025712928.1    Uniprot ID   -
Organism   Klebsiella quasivariicola strain KPN1705     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3634742..3645338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B8P98_RS18335 (B8P98_18330) helD 3634950..3637004 (-) 2055 WP_025712926.1 DNA helicase IV -
  B8P98_RS18340 (B8P98_18335) - 3637129..3637575 (+) 447 WP_002898425.1 YccF domain-containing protein -
  B8P98_RS18345 (B8P98_18340) yccS 3637593..3639728 (+) 2136 WP_025712927.1 YccS family putative transporter -
  B8P98_RS18350 (B8P98_18345) sxy/tfoX 3639742..3640338 (-) 597 WP_025712928.1 TfoX/Sxy family DNA transformation protein Regulator
  B8P98_RS18355 (B8P98_18350) sulA 3640696..3641205 (+) 510 WP_025712929.1 SOS-induced cell division inhibitor SulA -
  B8P98_RS18360 (B8P98_18355) ompA 3641558..3642610 (+) 1053 WP_087805440.1 porin OmpA -
  B8P98_RS18365 (B8P98_18360) matP 3642718..3643170 (-) 453 WP_025712931.1 macrodomain Ter protein MatP -
  B8P98_RS18370 (B8P98_18365) - 3643356..3645113 (+) 1758 WP_080897935.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22753.30 Da        Isoelectric Point: 9.4235

>NTDB_id=242349 B8P98_RS18350 WP_025712928.1 3639742..3640338(-) (sxy/tfoX) [Klebsiella quasivariicola strain KPN1705]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLLSWQSAQREKYHRRDSGRLKDLPNISFHMEVQLIHAGIPDVRTLRDIGAQQAWLKLRENN
ASLSHSVLLGLEAAIGGIHVAALPTPRRQELMEWAEDR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=242349 B8P98_RS18350 WP_025712928.1 3639742..3640338(-) (sxy/tfoX) [Klebsiella quasivariicola strain KPN1705]
ATGAGAAAACTCGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTTTCACCGCTGGGTCAATTACATACCCGTCCGCT
CTTTGGCGGTTACAGTCTGGCCATTGATGACACGGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAGGCCTGCG
AGCAGAGCGCCGCCTATCGGGTTGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTGAAA
TATTATCAGATCGACGACGCCTTATGGCGCGATGAGAAACAGCTCTTTCGCCTGTCGCTGTTGTCATGGCAGAGTGCCCA
GCGCGAAAAGTATCACCGCCGGGATTCTGGCCGTTTGAAGGATTTACCCAATATCAGCTTTCATATGGAAGTGCAGCTGA
TTCATGCGGGCATTCCGGATGTCAGGACGCTTCGGGATATTGGCGCCCAGCAAGCCTGGCTGAAGCTACGTGAAAATAAT
GCTTCTTTGTCACACAGTGTACTGCTGGGGCTGGAAGCCGCGATTGGCGGGATCCATGTCGCCGCGCTCCCGACGCCGCG
GCGTCAGGAGCTGATGGAATGGGCGGAGGATCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.254

99.495

0.5

Multiple sequence alignment