Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LPL_RS12690 Genome accession   NC_006369
Coordinates   2868094..2868885 (-) Length   263 a.a.
NCBI ID   WP_011216467.1    Uniprot ID   -
Organism   Legionella pneumophila str. Lens     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2863094..2873885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPL_RS12680 (lpl2511) legS1 2864400..2865557 (-) 1158 WP_011216465.1 Dot/Icm T4SS effector LegS1 -
  LPL_RS12685 (lpl2512) dacB 2866209..2868002 (-) 1794 WP_011216466.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  LPL_RS12690 (lpl2513) spo0J 2868094..2868885 (-) 792 WP_011216467.1 ParB/RepB/Spo0J family partition protein Regulator
  LPL_RS12695 (lpl2514) ceg33 2869002..2869505 (-) 504 WP_011216468.1 Dot/Icm T4SS effector Ceg33 -
  LPL_RS12700 (lpl2515) - 2869679..2870428 (-) 750 WP_011216469.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  LPL_RS12705 (lpl2516) rsmB 2870425..2871708 (-) 1284 WP_011216470.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LPL_RS12710 (lpl2517) fmt 2871705..2872649 (-) 945 WP_011216471.1 methionyl-tRNA formyltransferase -
  LPL_RS12715 (lpl2518) def 2872646..2873158 (-) 513 WP_010948295.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30142.30 Da        Isoelectric Point: 6.2513

>NTDB_id=24232 LPL_RS12690 WP_011216467.1 2868094..2868885(-) (spo0J) [Legionella pneumophila str. Lens]
MQTRFTYLPVTSLQAGQYQPRQDFNVTELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLNEVPCLIG
DYSDQQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLVGLNPEQQEMFAHQVIGEEWSVRHLEQEIKSYKNKDTNRPKNPRKDRDIERLQTILAEQVGAPVQIVNDGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=24232 LPL_RS12690 WP_011216467.1 2868094..2868885(-) (spo0J) [Legionella pneumophila str. Lens]
ATGCAAACCCGATTTACTTATTTACCTGTTACAAGCCTACAGGCAGGTCAGTATCAACCCAGGCAAGATTTTAATGTAAC
GGAGTTACAGGAATTAGCTCAGTCAATTTCTTCCCAGGGTTTAATTGAACCTTTGGTGGTAAGACCCATAGCAAAAGAAC
GATATGAAATTATTGCAGGGGAAAGAAGGTGGCGTGCGGCCAAATTGGCGGGATTAAATGAAGTCCCTTGTTTGATTGGA
GATTATAGTGATCAACAGGCATGTGCTCTCACTTTAATCGAAAATATTCAACGCCAGGATTTGAATTTAATTGAGGAAGC
CACTGGTTATAAGCGTTTAATTGAAGAATTCCATTATCATCAGGACGAGATCGCAGCGTTGGTAGGTAAATCTCGTAGCC
ATGTCGCAAATATTCTTCGTCTCCTTACCTTGACAGATAAGGTTAAACAGTTGGTTCGAGACAAAGTATTATCCTTTGGC
CATGCTCGTGTATTGGTTGGCTTAAATCCTGAACAGCAAGAAATGTTTGCTCACCAGGTTATTGGAGAGGAATGGTCTGT
CAGGCACTTAGAGCAAGAAATTAAATCTTATAAAAATAAAGATACGAACAGGCCCAAAAATCCCAGAAAAGACAGAGATA
TTGAGCGGTTACAGACTATCCTGGCTGAACAAGTGGGGGCTCCTGTACAAATTGTAAACGATGGCGAAGACGGAGGTTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGATTGGGCTTGAGATATGATTAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(146-195)

ParB/Sulfiredoxin domain (ParB_N)

(7-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

37.308

98.859

0.369

Multiple sequence alignment