Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LPL_RS12165 Genome accession   NC_006369
Coordinates   2739390..2740073 (+) Length   227 a.a.
NCBI ID   WP_011216370.1    Uniprot ID   Q5WTW4
Organism   Legionella pneumophila str. Lens     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2734390..2745073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPL_RS12150 (lpl2406) - 2736243..2737631 (-) 1389 WP_011216367.1 phosphomannomutase/phosphoglucomutase -
  LPL_RS12155 (lpl2407) dut 2737632..2738090 (-) 459 WP_011216368.1 dUTP diphosphatase -
  LPL_RS12160 (lpl2408) coaBC 2738117..2739313 (-) 1197 WP_011216369.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  LPL_RS12165 (lpl2409) radC 2739390..2740073 (+) 684 WP_011216370.1 RadC family protein Machinery gene
  LPL_RS12175 (lpl2411) lepB 2740414..2744298 (+) 3885 WP_011216372.1 Dot/Icm T4SS GTPase-activating effector LepB -
  LPL_RS12180 (lpl2412) thpR 2744422..2744985 (-) 564 WP_011216373.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25699.31 Da        Isoelectric Point: 6.7654

>NTDB_id=24230 LPL_RS12165 WP_011216370.1 2739390..2740073(+) (radC) [Legionella pneumophila str. Lens]
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWACN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=24230 LPL_RS12165 WP_011216370.1 2739390..2740073(+) (radC) [Legionella pneumophila str. Lens]
ATGATGGTTGCCCATACAGCGCAACAACTTGACTTGCGCGAAAAATTACTTACTAATGGAGTACATAGCCTCTCTGATAT
CGAATTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGGAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAAGTTCGTTATGCA
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTCATTGATCTGCAAAAAGAAATCCGGTTATCTAACACTCA
ACAGACTTATGCTTTTTTAAAAAAGCGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATCATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACAGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATCT
AGCCATTACAGAACGCATTCGAGATGCTCTGGACTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGCATGTAACTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WTW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.925

94.273

0.414

Multiple sequence alignment