Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LBA_RS08640 Genome accession   NC_006814
Coordinates   1794320..1796116 (+) Length   598 a.a.
NCBI ID   WP_003549813.1    Uniprot ID   -
Organism   Lactobacillus acidophilus NCFM     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1789320..1801116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBA_RS08615 (LBA1758) - 1789472..1790242 (-) 771 WP_003549818.1 threonine/serine exporter family protein -
  LBA_RS08620 (LBA1759) - 1790253..1791794 (-) 1542 WP_003549817.1 ABC-F family ATP-binding cassette domain-containing protein -
  LBA_RS08625 (LBA1760) - 1791803..1792177 (-) 375 WP_003549816.1 hypothetical protein -
  LBA_RS09905 (LBA1761) - 1792323..1792544 (+) 222 WP_011254568.1 hypothetical protein -
  LBA_RS09910 - 1792567..1792824 (+) 258 WP_238374670.1 GNAT family N-acetyltransferase -
  LBA_RS08635 (LBA1762) - 1792877..1794151 (-) 1275 WP_003549814.1 LCP family protein -
  LBA_RS08640 (LBA1763) pepF 1794320..1796116 (+) 1797 WP_003549813.1 oligoendopeptidase F Regulator
  LBA_RS08645 (LBA1765) - 1796229..1796474 (+) 246 WP_225852599.1 hypothetical protein -
  LBA_RS08650 - 1796498..1796755 (+) 258 WP_003549811.1 hypothetical protein -
  LBA_RS08655 (LBA1768) - 1796807..1798321 (-) 1515 WP_003549809.1 L-lactate permease -
  LBA_RS08660 (LBA1769) - 1798726..1799091 (+) 366 WP_011254569.1 pyridoxamine 5'-phosphate oxidase family protein -
  LBA_RS08665 (LBA1771) - 1799140..1799934 (-) 795 WP_015613417.1 metal ABC transporter permease -
  LBA_RS08670 (LBA1772) - 1799934..1800581 (-) 648 WP_011254570.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68255.07 Da        Isoelectric Point: 4.6043

>NTDB_id=24220 LBA_RS08640 WP_003549813.1 1794320..1796116(+) (pepF) [Lactobacillus acidophilus NCFM]
MAIPTRSEVPEELKWDLTRVFKTDEDWEAAFDNAKDEVEKLGDFKKILTKSGKDLYESLTQILAVKRQVENIYVYATMSS
DVDTSNSHYLGYVSRAQNLVNQFEAVTSFISPEILSIPADKFEQFKKDEPRLNDYAHYLETITNKRPHTLPAEEEKIIAD
ASDAMGVSENTFNVLTNSDMEYGYVQDDDGNMEQLSDGLYSLLIQSQNRDVRKGAFDTLYASYGQFQNSLASTLSGVVKK
HNYNAKVHKYDSAREAALAENNVPTKVYDTLIREVDSHLDLLHRYVALRKKILGLKDLQMWDMYVPLTGKPALSYNFEEA
KEVAKKALAPLGEDYLKHVDYIFNNRVIDVVESKNKVTGAYSGGAYDTDPYELLNWENNIDSLYTLVHETGHSVHSWYTR
NSQPYVYGDYPIFVAEIASTTNENILTEYFLDHITDSKTRAFILNYYLDSFKGTLFRQTQFAVFEQFIHEADAKGEPLTA
DILDEVYGQLNQHYYGDSVEPGGDIALEWSRIPHFYYDFYVYQYATGFAAATALANKVVHGSEADRDAYLGFLKAGSSNY
PTEIMKHAGVDMTKPDYLEDAFKTFEKRLAEFESLIEK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=24220 LBA_RS08640 WP_003549813.1 1794320..1796116(+) (pepF) [Lactobacillus acidophilus NCFM]
ATGGCAATTCCAACAAGAAGTGAAGTTCCAGAAGAATTAAAATGGGACTTAACCCGTGTTTTTAAGACAGATGAAGACTG
GGAAGCAGCCTTTGATAATGCAAAAGATGAAGTAGAAAAATTAGGTGATTTTAAAAAAATCCTTACTAAATCTGGCAAAG
ACTTATACGAAAGTTTGACCCAAATTTTAGCAGTTAAACGTCAAGTAGAAAATATTTACGTTTATGCAACTATGTCTAGT
GATGTTGATACTTCAAATTCTCACTATTTAGGTTATGTAAGCCGCGCACAAAATTTAGTTAACCAATTTGAGGCAGTAAC
TAGTTTTATCAGCCCAGAAATTCTGAGTATCCCTGCCGATAAGTTTGAACAATTCAAAAAGGATGAACCTCGTTTAAACG
ATTATGCTCACTATCTTGAGACAATCACTAATAAGCGTCCCCACACTTTACCTGCTGAAGAGGAAAAAATTATCGCAGAT
GCCAGTGATGCCATGGGCGTTTCAGAAAATACCTTTAACGTTTTAACTAATTCAGACATGGAATATGGCTACGTTCAAGA
TGACGATGGTAATATGGAACAATTGTCTGACGGTTTGTACTCACTTTTAATCCAATCACAAAACCGTGATGTCAGAAAAG
GCGCTTTTGATACGCTTTATGCAAGCTATGGTCAATTCCAAAATTCACTTGCTTCTACGCTTTCCGGCGTTGTAAAGAAG
CACAATTATAACGCTAAAGTTCACAAGTATGATTCAGCTCGTGAAGCAGCTTTAGCTGAAAACAACGTACCTACCAAGGT
TTACGACACTTTGATTCGAGAAGTTGACTCCCATCTTGATTTACTTCACCGTTATGTAGCACTTCGGAAGAAAATTTTGG
GACTTAAAGATTTACAAATGTGGGACATGTACGTGCCACTAACTGGTAAGCCTGCTCTTTCATATAATTTTGAAGAAGCA
AAGGAAGTAGCTAAGAAAGCTTTAGCTCCACTGGGCGAAGATTACTTAAAGCATGTTGATTATATCTTTAATAATCGCGT
AATTGATGTAGTTGAATCAAAGAATAAAGTAACTGGCGCATATTCTGGCGGTGCTTATGATACAGATCCATATGAACTTT
TAAACTGGGAAAACAACATTGACTCCTTATATACTCTAGTTCACGAAACTGGTCACTCAGTTCACTCTTGGTACACTCGC
AATAGCCAACCTTACGTTTATGGGGATTATCCTATTTTCGTAGCAGAAATTGCTTCAACCACTAACGAAAATATTTTGAC
TGAATACTTCTTAGATCATATTACTGATTCTAAGACACGCGCCTTTATTTTGAACTACTATCTTGATTCATTTAAGGGGA
CATTGTTCCGTCAAACCCAATTTGCGGTGTTTGAACAATTTATTCATGAAGCAGATGCTAAAGGTGAACCACTTACTGCT
GATATCTTGGATGAAGTTTATGGACAACTTAACCAACACTATTACGGTGACAGCGTTGAGCCAGGCGGCGATATTGCACT
TGAATGGTCACGTATCCCGCACTTCTACTACGACTTTTACGTTTACCAATATGCAACAGGATTTGCGGCTGCAACAGCTC
TTGCCAACAAGGTGGTTCATGGTTCTGAAGCTGATAGGGATGCATATCTTGGTTTTCTTAAGGCTGGTTCAAGTAACTAT
CCAACCGAAATTATGAAGCATGCTGGCGTTGATATGACTAAGCCAGACTACTTGGAAGATGCATTTAAGACATTTGAAAA
ACGTTTAGCCGAATTTGAAAGTTTGATTGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.178

99.331

0.508

Multiple sequence alignment