Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   CCZ37_RS15180 Genome accession   NZ_CP022742
Coordinates   419903..421003 (+) Length   366 a.a.
NCBI ID   WP_010319902.1    Uniprot ID   -
Organism   Vibrio qinghaiensis strain Q67     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 414903..426003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ37_RS15150 (CCZ37_15115) - 416083..416334 (-) 252 WP_010319896.1 YgjV family protein -
  CCZ37_RS15155 (CCZ37_15120) - 416642..416959 (-) 318 WP_010319897.1 DUF496 family protein -
  CCZ37_RS15160 (CCZ37_15125) - 417149..417346 (+) 198 WP_010319898.1 hypothetical protein -
  CCZ37_RS15165 (CCZ37_15130) - 417453..418106 (+) 654 WP_094501288.1 YceH family protein -
  CCZ37_RS15170 (CCZ37_15135) - 418107..418430 (+) 324 WP_094501290.1 GIY-YIG nuclease family protein -
  CCZ37_RS15175 (CCZ37_15140) - 418526..419677 (+) 1152 WP_094501293.1 conjugal transfer protein TraF -
  CCZ37_RS15180 (CCZ37_15145) luxP 419903..421003 (+) 1101 WP_010319902.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  CCZ37_RS15185 (CCZ37_15150) luxQ 421019..423565 (+) 2547 WP_094501295.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  CCZ37_RS15190 (CCZ37_15155) - 423610..424275 (-) 666 WP_244187310.1 PilZ domain-containing protein -
  CCZ37_RS15195 (CCZ37_15160) glpD 424418..425962 (-) 1545 WP_094501299.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41708.28 Da        Isoelectric Point: 5.9862

>NTDB_id=242080 CCZ37_RS15180 WP_010319902.1 419903..421003(+) (luxP) [Vibrio qinghaiensis strain Q67]
MRKILFLSFVFSVSLAASTQAAAQVLNGYWRYQEFLDLNPAQQVLTDQMIQAVRQPPAALSIEQDKPIHISVVYPGQQVS
DYWARNIKAFEMRLDELGIRYQINQVFTRPNIDIRQQSLSLMEAIRNKSDYLVFTLDTIRHRKFIEQLLSSNQTKIILQN
ITTPVKSWGDRQPFMYVGFDHEIGTMKLVDYYKKSVPKNSAYSVLYYSEGYVSDARGDSFIQEMSRDSKYHLASSFYTKA
TRDSAFDATLHILKQTPDINFIYACSTDVALGAMDALQQQNREDITLNGWGGGEAELEALQNSTLDVTIMRVNDDAGVAM
AEAIKWDLEGKPVPTVYSGDFELVTKEASSAYIDKLKKRAFRYSDH

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=242080 CCZ37_RS15180 WP_010319902.1 419903..421003(+) (luxP) [Vibrio qinghaiensis strain Q67]
ATGAGAAAAATCCTGTTCCTTTCATTTGTATTTAGTGTCAGTTTGGCAGCCTCCACTCAGGCTGCCGCACAAGTTTTAAA
TGGCTATTGGCGATATCAAGAGTTTTTAGATCTTAATCCTGCGCAACAGGTTCTTACCGACCAGATGATACAGGCAGTGC
GTCAACCTCCTGCTGCACTCTCAATAGAGCAAGATAAACCCATTCACATTTCTGTTGTTTATCCAGGCCAACAAGTTTCC
GATTATTGGGCACGCAATATCAAAGCTTTTGAGATGCGTTTAGATGAACTTGGGATCAGATACCAAATTAATCAGGTATT
TACTCGTCCGAATATTGATATTCGTCAACAAAGTTTATCGCTGATGGAAGCGATCAGAAACAAATCCGATTATTTGGTGT
TTACGCTTGATACCATCCGGCATCGTAAATTTATCGAGCAGTTGTTAAGCTCAAATCAAACCAAAATTATCCTGCAAAAT
ATCACCACGCCAGTAAAAAGTTGGGGAGATCGGCAGCCTTTTATGTACGTGGGGTTTGATCATGAAATTGGCACAATGAA
GCTGGTGGATTACTACAAAAAATCGGTGCCAAAGAATAGTGCTTATTCTGTACTCTATTATTCTGAAGGCTATGTTAGCG
ATGCACGCGGCGATAGTTTTATCCAAGAAATGAGTCGGGACAGTAAATATCACTTGGCCTCTTCGTTTTATACAAAAGCG
ACACGAGATAGTGCATTTGATGCAACTTTGCATATCCTTAAACAAACACCAGATATTAATTTTATTTATGCATGCTCTAC
TGATGTTGCACTCGGTGCCATGGATGCGCTGCAGCAGCAAAATAGAGAAGACATTACTTTAAACGGCTGGGGTGGTGGTG
AGGCTGAATTGGAAGCGTTACAAAATAGTACACTTGATGTCACTATTATGCGTGTCAATGATGATGCAGGTGTTGCTATG
GCGGAAGCCATTAAGTGGGATCTTGAAGGAAAACCGGTACCTACGGTTTACTCTGGTGATTTTGAATTGGTAACCAAAGA
GGCGTCTTCAGCGTATATTGATAAGCTCAAAAAACGAGCATTTCGTTACTCTGACCATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.889

98.361

0.628

Multiple sequence alignment