Detailed information NTG0242064

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: CCZ37_RS05350
• Genome accession: NZ_CP022741
• Coordinates: 1141036..1142460 (-)
• Length: 474 a.a.
• NCBI ID: WP_094499945.1
• Uniprot ID: -
• Organism: Vibrio qinghaiensis strain Q67
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1136036..1147460

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCZ37_RS05325 (CCZ37_05315)	-	1136104..1137402 (+)	1299	WP_094499943.1	PAS domain-containing methyl-accepting chemotaxis protein	-
CCZ37_RS05330 (CCZ37_05320)	purT	1137478..1138653 (-)	1176	WP_010319626.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
CCZ37_RS05335 (CCZ37_05325)	cdd	1138803..1139690 (-)	888	WP_094499944.1	cytidine deaminase	-
CCZ37_RS05340 (CCZ37_05330)	-	1139899..1140579 (-)	681	WP_010319624.1	CidB/LrgB family autolysis modulator	-
CCZ37_RS05345 (CCZ37_05335)	-	1140579..1140911 (-)	333	WP_033197434.1	CidA/LrgA family protein	-
CCZ37_RS05350 (CCZ37_05340)	sbcB	1141036..1142460 (-)	1425	WP_094499945.1	exodeoxyribonuclease I	Machinery gene
CCZ37_RS05355 (CCZ37_05345)	-	1142612..1143979 (-)	1368	WP_094499946.1	L-cystine transporter	-
CCZ37_RS05360 (CCZ37_05350)	-	1144256..1146391 (-)	2136	WP_094499947.1	type I secretion system permease/ATPase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54546.04 Da
• Isoelectric Point: 5.6683

>NTDB_id=242064 CCZ37_RS05350 WP_094499945.1 1141036..1142460(-) (sbcB) [Vibrio qinghaiensis strain Q67]
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCPILAPAKTLTAENAH
HIGVDRNLCLEHLALIKQYPEIREKLIGIYTIEREYKHSDDVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARNYPLTLSDEEQRRWATHCRDYFESHLGEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS

Nucleotide

• Length: 1425 bp

>NTDB_id=242064 CCZ37_RS05350 WP_094499945.1 1141036..1142460(-) (sbcB) [Vibrio qinghaiensis strain Q67]
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCGGGCGTTCGCACCGATATGGATTTTAATATTATTGGCGAACCACTGGTCATCTATTGCCAACCACCAGCGG
ACTATTTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACACCACAAAAAGCGGTGGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGTCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTACACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCGCTACGCCCAGAAGGCATCAACTGGCCCGAAAATGACGAAGGCTTTACC
AGTTTTAAGCTGGAGCATCTCTCAGTTGCCAATGGCATCGAACATGCGAATGCCCACGATGCTATGGCCGATGTTATCGC
CACCATTGAGCTAGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGGGTATGTTAGGCCGAGAATGCCAATAT
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATGCGGTTATTGTTGTGGACCTTGCCAAAAACCCTCA
ACCTCTGATCGATTTAAGCAGCGAAGAACTGCATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCCCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCACAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCATCAAGCAGTACCCTGAGATCAGAGAAAAGCTGAT
TGGCATCTACACAATTGAGCGAGAATATAAGCACAGTGACGATGTCGATACTCAACTCTACGACGGTTTCTTCTCTCCAG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGACCCAGTCAATCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGAAATTACCCATTGACATTAAGTGACGAAGAGCAAAGACGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGGAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTGGAAGACATCGCAAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	80.973	99.789	0.808