Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   CCZ37_RS02710 Genome accession   NZ_CP022741
Coordinates   548991..552383 (-) Length   1130 a.a.
NCBI ID   WP_094500784.1    Uniprot ID   A0A223N0W9
Organism   Vibrio qinghaiensis strain Q67     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 543991..557383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ37_RS02695 (CCZ37_02690) - 544393..545418 (-) 1026 WP_094499685.1 ABC transporter permease -
  CCZ37_RS02700 (CCZ37_02695) - 545421..546407 (-) 987 WP_010319476.1 ABC transporter permease -
  CCZ37_RS02705 (CCZ37_02700) - 546574..548244 (-) 1671 WP_010319477.1 ABC transporter substrate-binding protein -
  CCZ37_RS02710 (CCZ37_02705) chiS 548991..552383 (-) 3393 WP_094500784.1 response regulator Regulator
  CCZ37_RS02715 (CCZ37_02710) rsmC 552582..553625 (-) 1044 WP_094499686.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  CCZ37_RS02720 (CCZ37_02715) - 553709..554794 (-) 1086 WP_094499687.1 AI-2E family transporter -
  CCZ37_RS02725 (CCZ37_02720) hemL 555071..556366 (-) 1296 WP_094499688.1 glutamate-1-semialdehyde 2,1-aminomutase -
  CCZ37_RS02730 (CCZ37_02725) erpA 556687..557028 (+) 342 WP_010319613.1 iron-sulfur cluster insertion protein ErpA -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 127811.53 Da        Isoelectric Point: 6.3131

>NTDB_id=242058 CCZ37_RS02710 WP_094500784.1 548991..552383(-) (chiS) [Vibrio qinghaiensis strain Q67]
MFRFSRKQKFKRLQNTLMLAFLVLSITPLTVTAIFFLQSHTKDLQEQSTSHLLSVRDTKQQQVLDYLAAKESEVMGFVRS
ELAYASGGRFYGLVNAFQRLGLDIDQAREHAQQRYIPGSGDQIKTSILPQSSSYVGSERYRLLHKRYHWAYLELLKRSDF
DDILLVDLGGDVVYSVYKHDNYGTNLLTGKYKDSNLGKTFRQLEQQVSEQRKTNEEYTPVIISDFSPQEGQSVAWLGAPI
IQQGYLHSYAMFRLPNNGITKLVADTNATSQIRTLLVGQDHHSRILSYTQQEIETSQKVINLALSGLSAVGTYTNTLNEK
TIAAYAPVANKNINWALVVEIPEKEAYARVHQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
NVINTDRKDEIGRLAVSFERMQRSIREKMQLIKAQNKELESNIQLIRKQNDELHLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGSSGTITADHRYQLGIIISSGQRLTNLVDDLLDYHKMRYGSLDIKQCAVDLSGATRLVLELSNHLLNKKPIRV
INQIPDECIWVSADPQRLEQVLYNLVGNAIKYTTEGKIVISANVVDDKIRVQVVDTGQGIPAEQLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMQGTLYVSSQPMVGTTFSFTLPLASKAEIESTSYMETGHFQSPTISDIELPEMHSLPENKE
GPVLLIADDEPVNLRVLDSFLRLEGYQVRTAKDGNEVISAVEKEKPELLLLDIMMPGLSGYQVCEKLRETYDHAELPIIM
LTALNQTDDRVRGFAAGANDYLSKPFNKQELAARITAHLTASKAEQRRIENNQLQQELKRRAMVEASLLETQGRLLEQLE
SAPEAIICIRDDHKIRFANEAAARLFKRSQEQLKRSNAEELIAPKYLVVEQEHYCGNIDIYVEDSRQHMSADVLRLPDGS
GLQAMYIFNVGGNINAARINNLETAIEALSSYAFEGDKEKLQQLKELGGEFTRIADKVSGESQSKQDLMREVLVEAMTSA
LDYWERVSNQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILEHCQEYGPERTHIEAQRD
KLQKLLTSSL

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=242058 CCZ37_RS02710 WP_094500784.1 548991..552383(-) (chiS) [Vibrio qinghaiensis strain Q67]
ATGTTTAGGTTCTCTCGTAAGCAAAAATTTAAGCGCCTGCAAAATACTCTTATGCTGGCTTTTCTCGTTTTGAGCATCAC
GCCTTTAACTGTGACTGCCATTTTTTTTCTACAATCACACACTAAAGATCTTCAAGAACAAAGCACGTCTCACTTATTGT
CAGTCAGAGACACCAAGCAACAGCAAGTTCTCGATTACCTCGCGGCCAAAGAATCAGAAGTGATGGGGTTTGTTCGTTCA
GAGTTAGCTTATGCCAGTGGAGGGCGCTTTTACGGCTTAGTCAATGCGTTCCAAAGACTTGGTCTGGATATTGACCAAGC
TCGTGAGCATGCCCAGCAGCGTTATATTCCAGGCTCTGGTGATCAGATAAAAACGTCAATATTGCCACAATCGAGTAGCT
ATGTAGGCAGTGAACGGTATCGCCTACTGCACAAACGCTATCATTGGGCGTATTTAGAACTGCTTAAACGTTCTGATTTT
GACGATATTTTACTGGTGGATCTCGGCGGTGATGTTGTTTATTCCGTTTATAAGCACGACAACTATGGGACCAATTTACT
GACTGGAAAATACAAAGATAGTAATCTGGGTAAAACATTCCGCCAGTTAGAGCAGCAAGTTAGCGAACAACGAAAAACCA
ATGAAGAATATACACCAGTCATTATTTCTGACTTTTCACCACAAGAAGGGCAATCAGTTGCTTGGCTTGGCGCGCCCATT
ATTCAACAGGGCTACCTGCACAGCTACGCCATGTTCCGCCTACCAAACAATGGCATCACAAAACTCGTTGCTGACACCAA
TGCGACATCGCAAATAAGGACTTTACTGGTCGGGCAAGATCATCATTCTCGAATACTCTCTTACACGCAGCAAGAAATCG
AGACTAGTCAAAAAGTGATCAATCTTGCGCTTTCTGGGTTGAGTGCCGTTGGTACTTACACCAATACATTGAATGAGAAA
ACCATTGCCGCCTATGCACCTGTTGCAAACAAAAATATCAATTGGGCTTTGGTGGTAGAGATACCAGAAAAAGAGGCTTA
TGCGCGAGTTCATCAACTTGAGAAATTATTTATTTTCGCCATGCTAACCGCGATTATTTTAGTCGTCATCGCTTCACATT
ATCTCTCTAATTTTATTACCTCTCCCCTACTGAAGCTCACTTGGGCGGCAGAAAAAGTCTCAGCTGGGGATTTAGATGAA
AATGTTATCAATACCGATCGTAAAGATGAGATTGGTCGACTCGCAGTGAGTTTTGAGCGTATGCAGCGTTCAATCCGAGA
AAAAATGCAGCTGATTAAAGCGCAAAATAAAGAGCTCGAAAGCAACATTCAATTAATCCGCAAACAGAACGATGAGTTGC
ATCTCGCTAACAAACTAAAAGATGAATTCCTAGCCACAACCTCACATGAATTAAGAACACCGCTGCACGGCATGGTCGGT
ATTGCAGAAGCACTGATCTCTGGGTCAAGTGGAACTATCACCGCCGATCACCGTTATCAATTGGGCATAATCATCAGCAG
TGGACAACGGCTGACAAACTTGGTCGATGACCTACTCGATTACCATAAAATGCGCTATGGCAGCTTGGATATCAAACAGT
GTGCCGTTGATCTATCCGGCGCAACACGCTTAGTGTTAGAGCTGTCGAATCATCTACTCAACAAAAAGCCCATTCGCGTA
ATAAACCAAATCCCTGACGAATGCATTTGGGTCTCTGCCGATCCACAACGATTAGAGCAAGTGCTTTATAACCTTGTAGG
AAACGCCATTAAATATACGACTGAAGGGAAAATTGTCATTTCAGCCAATGTGGTTGATGACAAGATTCGCGTCCAAGTTG
TCGATACGGGACAAGGCATTCCAGCAGAGCAACTTGAACACATCTTTGAACCACTGATTCAAGCAGGGCAAGATGCCAGT
CGTTATCGACAAGGCGCTGGTTTAGGTCTTTCGATCAGCCGTCAATTGATCGAATTGATGCAAGGAACGCTTTATGTCAG
TAGCCAACCTATGGTCGGTACAACATTCAGCTTTACCTTGCCATTAGCATCAAAAGCGGAAATTGAGTCGACAAGCTATA
TGGAAACCGGCCATTTCCAATCTCCGACCATTTCAGACATTGAACTGCCTGAAATGCATTCACTGCCTGAAAATAAAGAA
GGCCCAGTGCTACTGATAGCCGATGATGAACCCGTCAATCTGCGTGTCCTAGACAGCTTCCTACGTTTAGAAGGCTATCA
AGTCCGCACCGCTAAAGATGGCAATGAAGTCATTAGCGCGGTCGAAAAAGAAAAACCGGAACTTCTACTGCTCGACATTA
TGATGCCAGGATTAAGCGGCTACCAAGTCTGTGAAAAGTTAAGAGAAACATACGATCATGCCGAACTACCTATCATTATG
TTGACGGCATTAAATCAAACTGACGATAGAGTTCGTGGTTTTGCAGCGGGAGCGAACGATTACTTATCGAAGCCGTTTAA
TAAGCAAGAGCTCGCTGCACGTATTACGGCGCATTTAACGGCCAGCAAAGCTGAACAAAGACGTATTGAGAACAACCAAC
TGCAACAAGAGCTGAAACGTAGAGCCATGGTAGAAGCCAGTTTATTGGAAACCCAAGGCCGCCTACTAGAGCAACTTGAA
TCTGCTCCTGAGGCGATTATTTGCATTCGAGACGATCATAAAATCCGCTTTGCAAATGAAGCTGCTGCTCGGTTATTTAA
GCGTAGCCAAGAACAACTAAAGCGCTCAAATGCGGAAGAACTCATCGCTCCCAAATACTTAGTCGTCGAGCAAGAGCATT
ACTGCGGTAATATCGATATCTATGTCGAAGATTCACGTCAGCATATGTCTGCTGATGTGTTACGGCTACCGGATGGCTCT
GGGTTGCAGGCTATGTACATCTTTAACGTAGGTGGAAACATCAATGCAGCGCGCATCAATAACCTTGAAACCGCTATTGA
AGCGCTATCCAGTTACGCATTTGAAGGCGATAAAGAAAAACTGCAGCAGCTCAAAGAACTCGGTGGTGAGTTCACACGTA
TCGCCGACAAAGTATCGGGAGAGAGTCAATCTAAGCAAGATTTAATGCGCGAAGTACTGGTTGAAGCAATGACCAGTGCT
TTAGATTACTGGGAACGGGTCAGTAACCAAAGCAAGTTTACCTTTGCAGAGCAGAGTGGGCTATGGCGAGTGTATCTCGA
TAGAAGCACATTACAGACTCGGACACTAGACAAGTACTTACGTATCGAGACATTGCCCAAGACACCTCGCTGGCGTACGG
TTCTTAATTCGTTAGATTACATTCTTGAGCATTGTCAGGAGTACGGCCCAGAACGTACTCATATCGAAGCGCAGCGCGAT
AAGTTGCAAAAGCTACTGACCTCATCACTCTAA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(876-926)

HAMP domain (HAMP)

(375-427)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(574-683)

His Kinase A (phospho-acceptor) domain (HisKA)

(460-525)

Response regulator receiver domain (Response_reg)

(725-835)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223N0W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

81.649

99.823

0.815

Multiple sequence alignment