Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CCZ37_RS02350 Genome accession   NZ_CP022741
Coordinates   465024..465542 (+) Length   172 a.a.
NCBI ID   WP_010319518.1    Uniprot ID   A0A233HL62
Organism   Vibrio qinghaiensis strain Q67     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 460024..470542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ37_RS02340 (CCZ37_02335) - 460436..463291 (+) 2856 WP_094499649.1 pitrilysin family protein -
  CCZ37_RS02345 (CCZ37_02340) gshA 463394..464959 (+) 1566 WP_094500782.1 glutamate--cysteine ligase -
  CCZ37_RS02350 (CCZ37_02345) luxS 465024..465542 (+) 519 WP_010319518.1 S-ribosylhomocysteine lyase Regulator
  CCZ37_RS02355 (CCZ37_02350) - 465637..466911 (-) 1275 WP_094499650.1 CNNM domain-containing protein -
  CCZ37_RS02360 (CCZ37_02355) - 466995..467789 (-) 795 WP_026027563.1 inner membrane protein YpjD -
  CCZ37_RS02365 (CCZ37_02360) ffh 468096..469478 (+) 1383 WP_010319521.1 signal recognition particle protein -
  CCZ37_RS02370 (CCZ37_02365) rpsP 469693..469941 (+) 249 WP_010319522.1 30S ribosomal protein S16 -
  CCZ37_RS02375 (CCZ37_02370) rimM 469971..470525 (+) 555 WP_013857691.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18955.76 Da        Isoelectric Point: 5.2114

>NTDB_id=242053 CCZ37_RS02350 WP_010319518.1 465024..465542(+) (luxS) [Vibrio qinghaiensis strain Q67]
MPLLDSFTVDHTRMHAPAVRVAKNMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGHDVEIIDISP
MGCRTGFYMSLIGAPTEAQVAQAWLAAMHDVLKVESQDQIPELNEYQCGTASMHSLTEAKEIAQAIITAGIAVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=242053 CCZ37_RS02350 WP_010319518.1 465024..465542(+) (luxS) [Vibrio qinghaiensis strain Q67]
ATGCCATTACTCGACAGTTTTACGGTAGATCACACTCGTATGCATGCGCCTGCGGTACGTGTGGCAAAAAATATGCAGAC
GCCTAAAGGGGATACAATCACCGTATTTGATCTCCGTTTTACTGCTCCAAACAAAGATATTCTTTCAGAAAAAGGGATCC
ACACTTTAGAGCATTTATACGCTGGCTTTATGCGCGCGCACTTAAATGGTCATGATGTAGAAATCATCGACATCTCACCT
ATGGGCTGCCGCACAGGTTTTTACATGAGCTTGATTGGCGCGCCAACAGAAGCGCAAGTGGCGCAAGCGTGGTTAGCGGC
GATGCATGATGTGCTAAAAGTAGAGAGCCAAGATCAGATCCCTGAACTAAACGAATACCAATGTGGTACAGCCTCAATGC
ACTCGTTAACAGAAGCTAAAGAGATTGCTCAAGCGATTATCACGGCAGGTATTGCGGTGAATAAAAATGATGAGCTTGCT
TTACCTGAGTCGATGCTCAAAGAGCTGAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HL62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878

Multiple sequence alignment