Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CCZ37_RS02210 Genome accession   NZ_CP022741
Coordinates   438371..439372 (+) Length   333 a.a.
NCBI ID   WP_017047531.1    Uniprot ID   -
Organism   Vibrio qinghaiensis strain Q67     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 433371..444372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ37_RS02180 (CCZ37_02175) ispD 433495..434226 (+) 732 WP_010320457.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CCZ37_RS02185 (CCZ37_02180) ispF 434219..434704 (+) 486 WP_013857718.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CCZ37_RS02190 (CCZ37_02185) truD 434878..435975 (+) 1098 WP_017048938.1 tRNA pseudouridine(13) synthase TruD -
  CCZ37_RS02195 (CCZ37_02190) surE 435988..436734 (+) 747 WP_010320454.1 5'/3'-nucleotidase SurE -
  CCZ37_RS02200 (CCZ37_02195) - 436734..437360 (+) 627 WP_094499638.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  CCZ37_RS02205 (CCZ37_02200) nlpD 437366..438298 (+) 933 WP_167372419.1 murein hydrolase activator NlpD -
  CCZ37_RS02210 (CCZ37_02205) rpoS 438371..439372 (+) 1002 WP_017047531.1 RNA polymerase sigma factor RpoS Regulator
  CCZ37_RS02215 (CCZ37_02210) mutS 439583..442171 (-) 2589 WP_094499640.1 DNA mismatch repair protein MutS -
  CCZ37_RS02220 (CCZ37_02215) cysM 442413..443303 (-) 891 WP_047688250.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 38272.18 Da        Isoelectric Point: 4.4454

>NTDB_id=242050 CCZ37_RS02210 WP_017047531.1 438371..439372(+) (rpoS) [Vibrio qinghaiensis strain Q67]
MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQMYLSEIGFSPLLTAQEEVLYA
RRSLRGDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMN
QTRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPD
ANNSDPEISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQ
GLNMEALFNVEYD

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=242050 CCZ37_RS02210 WP_017047531.1 438371..439372(+) (rpoS) [Vibrio qinghaiensis strain Q67]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAGTTTGAAGACCAAGAGATCATGGATTCGATTGAGGTTGATGAAGA
ACTCACCACCACTAAAAGCCAAAGCGATGACGATGTTCAAATCGAAGATGCCAAAGAAGGGTTTGATGCGTCAACAAAAA
GCTTAGATGCAACACAGATGTATCTTAGCGAGATTGGTTTTTCTCCATTATTAACAGCTCAAGAAGAAGTACTTTATGCT
CGTCGTTCACTGAGAGGCGATGAAGCTGCTCGTAAACGCATGATCGAAAGTAACTTACGTTTGGTCGTTAAAATTTCTCG
CCGTTATGGTAATCGTGGCTTGGCTTTACTCGATCTAATTGAAGAGGGTAATTTAGGCTTGATCCGTGCGGTAGAAAAAT
TTGATCCAGAACGTGGCTTTAGATTCTCAACTTATGCTACTTGGTGGATCCGTCAAACCATTGAACGTGCATTAATGAAC
CAAACGCGCACTATCCGTTTGCCAATTCACGTCGTTAAAGAGTTGAATATCTACCTTCGCACGGCTCGCGAGCTATCGCA
GAAGTTAGATCACGAACCTACCGCAGAAGAAATTGCGTTCCAACTGGATAAGCCAGTCGAAGATGTCAGTAAAATGCTGC
GTCTGAACGAGCGTATCAGTTCTGTCGATACGCCGATTGGCGGCGATGGTGACAAAGCGCTACTCGATATCATCCCAGAT
GCGAACAACTCTGATCCTGAAATTTCTACGCAAGATGATGATATCCGCGAATCACTACTGAATTGGTTAGATGAACTGAA
CCCAAAACAAAAAGAGGTACTTGCACGCCGTTTTGGACTATTAGGTTATGAGCCGTCCACCTTAGAAGAAGTAGGGCGCG
AAATTAACTTAACCCGTGAACGAGTTCGTCAAATTCAAGTGGAAGGCCTACGTCGTTTGAGAGAGATCTTGGTTAAACAA
GGCTTGAACATGGAAGCGCTGTTTAATGTTGAATACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(174-247)

Sigma-70, region 4 (Sigma70_r4)

(262-315)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 2 (Sigma70_r2)

(94-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

86.826

100

0.871

Multiple sequence alignment